Gene detail

Detail information of GWHGAAZE019110

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280159.1	0	PREDICTED: probable receptor-like protein kinase At2g42960 [Vitis vinifera]
Swissprot	tr\|Q8LEB6\|Y5185_ARATH	0	Probable receptor-like protein kinase At5g18500
trEMBL	tr\|D7UA94\|D7UA94_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI39658.3}
TAIR10	AT1G56720.3	3E-160	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	32006994	32011022	+
GWHAAZE00000005	mRNA	32006994	32011022	+
GWHAAZE00000005	exon	32006994	32007667	+
GWHAAZE00000005	exon	32007778	32007882	+
GWHAAZE00000005	exon	32008093	32008215	+
GWHAAZE00000005	exon	32008290	32008533	+
GWHAAZE00000005	exon	32010710	32010884	+
GWHAAZE00000005	exon	32010985	32011022	+
GWHAAZE00000005	CDS	32006994	32007667	+
GWHAAZE00000005	CDS	32007778	32007882	+
GWHAAZE00000005	CDS	32008093	32008215	+
GWHAAZE00000005	CDS	32008290	32008533	+
GWHAAZE00000005	CDS	32010710	32010884	+
GWHAAZE00000005	CDS	32010985	32011022	+

Transcript Sequence
>GWHTAAZE019132 TACTTTGTCATTCCGAAAAGAATGGCGACCGATCTAAACACGGAGCTATCCAAGTCAACTGCCTTTTTCGGCCTCAAGGTCTGGGAGTTGATCGGTGCCGTTATTGGATTATTTATTGTACTCATCCTCTTGGCATTAACTTTTTATCTCACTTCGCAAAAGAAATCAAGAAGAGCTAGAGAAAAAAGGATTCCCCTTACCCAAATCCCAAGTGTTTCAAAGGAAATTAAAGAAGTACGCGTGGAGCAAATTTCTACGAACGAATTTGTTCCACAAAATGGGATTCTTCTTACAATTCACGATAAATCCAGTGATAGAGAGTCGGATAAGGTTTTAGTGCACCTAGGAATGGGGAATACAAAGAACGGAGATAATAACAGTAGCCAAGGTTCTTTTCATCATTTTGATGGGTCAGAAGACGGGAGTTCGGGCACATTTGTTGTGTATAAACCTTCTTCTTCGCAGCATCCGATAACTGCCCCTTCTCCTTTGAGTGGCCTGCCTGAATTTTCCCACTTGGGTTGGGGTCACTGGTTTACATTAAGAGATCTCGAACTTGCAACAAACCGGTTTTCGAAGGAGAATGTTCTCGGGGAGGGTGGATATGGAGTTGTTTATAGGGGACAGTTGGTTAATGGAACTCCTGTGGCAGTTAAGAAACTCTTTAACAACCTGGGCCAAGCAGAAAAGGAATTTAGCGTGGAGGTTGAAGCTATTGGCCATGTGCGTCATAAAAACTTGGTCCGACTTTTGGGTTATTGCATTGAAGGAACTCATAGGATGTTAGTGTATGAGTATGTCAACAATGGAAACTTAGAACAATGGCTTCATGGAGCTATGCGCCAGCATGGATATCTTACTTGGGAGGCCAGGATGAAGGTTCTTCTTGGCACATCTAAGGCTCTTGCATACTTGCACGAAGCAATTGAGCCGAAAGTGGTCCACCGAGATATCAAGTCAAGCAATATATTGATCGATGATGACTTTAATGCCAAAGTTTCTGACTTTGGCCTGGCTAAGTTACTTGGTGCTGGAAAAAGTCACATTACTACTCGGGTCATGGGAACCTTTGGGTTAGTATACTTCTTATATTATTACACTGTATGTATACCCATACTCGATTATCTTTACTTTAGACCCTGCTTGGTAAATCTTGTCGATTGGCTGAAAATGATGGTTGGAAGCAGGCGTTCAGAGGAAGTGGTGGACCCAAACATTGAAACAAAGCCATCGACAAGAGCCCTTAAACGAGCCCTTTTAACTGCTTTGAGATGTGTCGATCCTGATTCTGGCAAGAGACCCAGGATGAGCCAAGTTGTTCAACCACCTGAGCCTGAGTGTCCTAGTTTCGAGCCTTGA

Network for GWHGAAZE019110

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	192	356	8.60E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	53.860
	SRR3591706	second leaf	32.685
	SRR3591707	mature leaf	20.776
	SRR3591708	Shoot apex	54.509
	SRR3591709	Stem	35.731
	SRR3591710	White floral bud	56.320
	SRR3591711	White flower	41.214
	SRR3591712	Green floral bud	60.902
	SRR3591713	Yellow flower	21.874
SRP173429	SRR8316895	Juvenile bud stage	39.289
	SRR8316896	Juvenile bud stage	43.477
	SRR8316897	Juvenile bud stage	18.979
	SRR8316894	Third green stage	20.115
	SRR8316900	Third green stage	51.052
	SRR8316901	Third green stage	50.779
	SRR8316898	Complete white stage	33.269
	SRR8316899	Complete white stage	76.368
	SRR8316903	Complete white stage	47.651
	SRR8316902	Silver flowering stage	20.740
	SRR8316904	Silver flowering stage	28.830
	SRR8316905	Silver flowering stage	14.261
	SRR8316906	Gold flowering stage	36.052
	SRR8316907	Gold flowering stage	35.970
	SRR8316908	Gold flowering stage	46.904
SRP132670	SRR6706286	Control	50.131
	SRR6706287	Light intensity 50%	48.388
	SRR6706288	Light intensity 20%	51.599
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.812
	CNS0095593	Slightly white alabastrum(diploid) 2	33.084
	CNS0095594	Slightly white alabastrum(diploid) 3	24.525
	CNS0095595	Whole white alabastrum(diploid) 2	24.419
	CNS0095596	Whole white alabastrum(diploid) 3	20.520
	CNS0095597	Whole white alabastrum(diploid) 4	21.922
	CNS0095598	Silvery flower (diploied) 1	28.053
	CNS0095599	Silvery flower (diploied) 2	22.278
	CNS0095600	Silvery flower (diploied) 3	45.064
	CNS0095601	Golden flower (diploid) 1	20.202
	CNS0095602	Golden flower (diploid) 2	30.678
	CNS0095603	Golden flower (diploid) 3	28.246
	CNS0095604	Slightly white alabastrum(tetraploid) 1	36.784
	CNS0095605	Slightly white alabastrum(tetraploid) 2	30.319
	CNS0095606	Slightly white alabastrum(tetraploid) 3	88.215
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.903
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.326
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.052
	CNS0095610	Silvery flower (tetraploid) 1	42.561
	CNS0095611	Silvery flower (tetraploid) 2	45.975
	CNS0095612	Silvery flower (tetraploid) 3	56.079
	CNS0095613	Golden flower (tetraploid) 1	19.389
	CNS0095614	Golden flower (tetraploid) 2	34.590
	CNS0095615	Golden flower (tetraploid) 3	26.902
CRA001975	CRR073297	Stem 1	59.618
	CRR073298	Stem 2	57.862
	CRR073299	Stem 3	51.029
	CRR073300	Leaf 1	61.014
	CRR073301	Leaf 2	54.612
	CRR073302	Leaf 3	52.296
	CRR073303	Juvenile bud 1	49.599
	CRR073304	Juvenile bud 2	51.973
	CRR073305	Juvenile bud 3	62.018
	CRR073306	Third green 1	52.752
	CRR073307	Third green 2	32.907
	CRR073308	Third green 3	45.717
	CRR073309	Second white 1	40.439
	CRR073310	Second white 2	39.013
	CRR073311	Second white 3	38.466
	CRR073312	Silver flowering 1	24.208
	CRR073313	Silver flowering 2	19.613
	CRR073314	Silver flowering 3	16.594
	CRR073315	Gold flowering 1	10.350
	CRR073316	Gold flowering 2	15.369
	CRR073317	Gold flowering 3	11.357
	CRR073318	Tawny withering 1	21.975
	CRR073319	Tawny withering 2	15.634
	CRR073320	Tawny withering 3	30.619