Detail information of GWHGAAZE019096


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCAN76246.15.1548E-126hypothetical protein VITISV_023382 [Vitis vinifera]
Swissprottr|Q9SBC5|PIF3_ARATH1E-32Transcription factor PIF3
trEMBLtr|A5AZT1|A5AZT1_VITVI2E-126Putative uncharacterized protein {ECO:0000313|EMBL:CAN76246.1}
TAIR10AT1G09530.29E-15phytochrome interacting factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3171238631714897-
GWHAAZE00000005mRNA3171238631714897-
GWHAAZE00000005exon3171454731714897-
GWHAAZE00000005exon3171383531714083-
GWHAAZE00000005exon3171292531713737-
GWHAAZE00000005exon3171258431712824-
GWHAAZE00000005exon3171238631712487-
GWHAAZE00000005five_prime_UTR3171454731714897-
GWHAAZE00000005five_prime_UTR3171391531714083-
GWHAAZE00000005CDS3171383531713914-
GWHAAZE00000005CDS3171292531713737-
GWHAAZE00000005CDS3171258431712824-
GWHAAZE00000005CDS3171238631712487-
Transcript Sequence

Network for GWHGAAZE019096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12126PIF3 Plant hormone signal transduction map04075
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.334
SRR3591706second leaf29.836
SRR3591707mature leaf35.452
SRR3591708Shoot apex15.184
SRR3591709Stem19.262
SRR3591710White floral bud7.510
SRR3591711White flower15.856
SRR3591712Green floral bud5.539
SRR3591713Yellow flower4.676
SRP173429 SRR8316895Juvenile bud stage 6.618
SRR8316896Juvenile bud stage 7.752
SRR8316897Juvenile bud stage 4.455
SRR8316894Third green stage 4.585
SRR8316900Third green stage 9.888
SRR8316901Third green stage 7.497
SRR8316898Complete white stage 1.280
SRR8316899Complete white stage 12.452
SRR8316903Complete white stage 3.136
SRR8316902Silver flowering stage0.909
SRR8316904Silver flowering stage2.419
SRR8316905Silver flowering stage0.651
SRR8316906Gold flowering stage 2.847
SRR8316907Gold flowering stage 3.497
SRR8316908Gold flowering stage 5.118
SRP132670SRR6706286Control6.532
SRR6706287Light intensity 50%7.595
SRR6706288Light intensity 20%7.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.367
CNS0095593Slightly white alabastrum(diploid) 25.280
CNS0095594Slightly white alabastrum(diploid) 33.484
CNS0095595Whole white alabastrum(diploid) 24.148
CNS0095596Whole white alabastrum(diploid) 33.564
CNS0095597Whole white alabastrum(diploid) 42.676
CNS0095598Silvery flower (diploied) 113.869
CNS0095599Silvery flower (diploied) 29.458
CNS0095600Silvery flower (diploied) 36.494
CNS0095601Golden flower (diploid) 17.576
CNS0095602Golden flower (diploid) 212.407
CNS0095603Golden flower (diploid) 312.756
CNS0095604Slightly white alabastrum(tetraploid) 15.174
CNS0095605Slightly white alabastrum(tetraploid) 22.381
CNS0095606Slightly white alabastrum(tetraploid) 315.893
CNS0095607Whole white alabastrum(tetraploid) 13.072
CNS0095608Whole white alabastrum(tetraploid) 21.516
CNS0095609Whole white alabastrum(tetraploid) 37.056
CNS0095610Silvery flower (tetraploid) 16.281
CNS0095611Silvery flower (tetraploid) 23.267
CNS0095612Silvery flower (tetraploid) 30.973
CNS0095613Golden flower (tetraploid) 12.801
CNS0095614Golden flower (tetraploid) 25.487
CNS0095615Golden flower (tetraploid) 32.817
CRA001975CRR073297Stem 14.289
CRR073298Stem 24.767
CRR073299Stem 32.542
CRR073300Leaf 14.428
CRR073301Leaf 24.473
CRR073302Leaf 32.926
CRR073303Juvenile bud 14.326
CRR073304Juvenile bud 21.375
CRR073305Juvenile bud 35.244
CRR073306Third green 10.141
CRR073307Third green 20.255
CRR073308Third green 30.343
CRR073309Second white 10.000
CRR073310Second white 20.185
CRR073311Second white 30.399
CRR073312Silver flowering 10.033
CRR073313Silver flowering 20.029
CRR073314Silver flowering 30.233
CRR073315Gold flowering 12.049
CRR073316Gold flowering 22.775
CRR073317Gold flowering 31.072
CRR073318Tawny withering 13.110
CRR073319Tawny withering 20.728
CRR073320Tawny withering 32.243