Detail information of GWHGAAZE019091


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006423951.10hypothetical protein CICLE_v10028527mg [Citrus clementina]
Swissprottr|C6TEX6|FEN1_SOYBN0Flap endonuclease 1 {ECO:0000255|HAMAP-Rule:MF_03140}
trEMBLtr|V4SJI8|V4SJI8_9ROSI0Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_03140}
TAIR10AT5G26680.22E-1605'-3' exonuclease family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3155607131561295-
GWHAAZE00000005mRNA3155607131561295-
GWHAAZE00000005exon3155607131556154-
GWHAAZE00000005exon3155626131556375-
GWHAAZE00000005exon3155678231556863-
GWHAAZE00000005exon3155716731557242-
GWHAAZE00000005exon3155791831558027-
GWHAAZE00000005exon3155844231558478-
GWHAAZE00000005exon3155863431558699-
GWHAAZE00000005exon3155955431559601-
GWHAAZE00000005exon3155976031559808-
GWHAAZE00000005exon3155991031559963-
GWHAAZE00000005exon3156008031560139-
GWHAAZE00000005exon3156090231560960-
GWHAAZE00000005exon3156107031561186-
GWHAAZE00000005exon3156128431561295-
GWHAAZE00000005CDS3156128431561295-
GWHAAZE00000005CDS3156107031561186-
GWHAAZE00000005CDS3156090231560960-
GWHAAZE00000005CDS3156008031560139-
GWHAAZE00000005CDS3155991031559963-
GWHAAZE00000005CDS3155976031559808-
GWHAAZE00000005CDS3155955431559601-
GWHAAZE00000005CDS3155863431558699-
GWHAAZE00000005CDS3155844231558478-
GWHAAZE00000005CDS3155791831558027-
GWHAAZE00000005CDS3155716731557242-
GWHAAZE00000005CDS3155678231556863-
GWHAAZE00000005CDS3155626131556375-
GWHAAZE00000005CDS3155607131556154-
Transcript Sequence

Network for GWHGAAZE019091

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00752.18XPG_N11079.40E-30
PF00867.19XPG_I1472231.20E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04799FEN1, RAD2 DNA replication map03030
Base excision repairmap03410
Non-homologous end-joiningmap03450

Gene Ontology

GO term OntologyName
GO:0006281biological_processDNA repair
GO:0004518molecular_functionnuclease activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
GO:0003677molecular_functionDNA binding
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.124
SRR3591706second leaf7.277
SRR3591707mature leaf3.784
SRR3591708Shoot apex30.424
SRR3591709Stem10.918
SRR3591710White floral bud10.414
SRR3591711White flower11.881
SRR3591712Green floral bud9.079
SRR3591713Yellow flower11.625
SRP173429 SRR8316895Juvenile bud stage 17.070
SRR8316896Juvenile bud stage 25.765
SRR8316897Juvenile bud stage 12.911
SRR8316894Third green stage 7.226
SRR8316900Third green stage 11.250
SRR8316901Third green stage 11.987
SRR8316898Complete white stage 2.764
SRR8316899Complete white stage 15.157
SRR8316903Complete white stage 8.486
SRR8316902Silver flowering stage4.571
SRR8316904Silver flowering stage7.164
SRR8316905Silver flowering stage2.404
SRR8316906Gold flowering stage 11.950
SRR8316907Gold flowering stage 11.579
SRR8316908Gold flowering stage 8.642
SRP132670SRR6706286Control15.602
SRR6706287Light intensity 50%15.363
SRR6706288Light intensity 20%16.034
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.806
CNS0095593Slightly white alabastrum(diploid) 211.113
CNS0095594Slightly white alabastrum(diploid) 313.210
CNS0095595Whole white alabastrum(diploid) 213.075
CNS0095596Whole white alabastrum(diploid) 36.555
CNS0095597Whole white alabastrum(diploid) 46.772
CNS0095598Silvery flower (diploied) 117.105
CNS0095599Silvery flower (diploied) 216.780
CNS0095600Silvery flower (diploied) 313.281
CNS0095601Golden flower (diploid) 116.575
CNS0095602Golden flower (diploid) 215.132
CNS0095603Golden flower (diploid) 315.696
CNS0095604Slightly white alabastrum(tetraploid) 111.549
CNS0095605Slightly white alabastrum(tetraploid) 29.628
CNS0095606Slightly white alabastrum(tetraploid) 321.588
CNS0095607Whole white alabastrum(tetraploid) 15.938
CNS0095608Whole white alabastrum(tetraploid) 23.378
CNS0095609Whole white alabastrum(tetraploid) 38.722
CNS0095610Silvery flower (tetraploid) 114.074
CNS0095611Silvery flower (tetraploid) 211.812
CNS0095612Silvery flower (tetraploid) 36.665
CNS0095613Golden flower (tetraploid) 112.924
CNS0095614Golden flower (tetraploid) 214.808
CNS0095615Golden flower (tetraploid) 351.619
CRA001975CRR073297Stem 124.631
CRR073298Stem 216.986
CRR073299Stem 314.981
CRR073300Leaf 112.216
CRR073301Leaf 211.433
CRR073302Leaf 313.311
CRR073303Juvenile bud 19.070
CRR073304Juvenile bud 26.356
CRR073305Juvenile bud 39.928
CRR073306Third green 11.096
CRR073307Third green 21.240
CRR073308Third green 32.466
CRR073309Second white 11.435
CRR073310Second white 22.082
CRR073311Second white 32.795
CRR073312Silver flowering 13.840
CRR073313Silver flowering 25.243
CRR073314Silver flowering 36.269
CRR073315Gold flowering 16.486
CRR073316Gold flowering 28.406
CRR073317Gold flowering 32.194
CRR073318Tawny withering 119.811
CRR073319Tawny withering 213.438
CRR073320Tawny withering 322.275