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Detail information of GWHGAAZE019082
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_002266580.1
0
PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera]
Swissprot
tr|Q588V7|TEB_ARATH
2E-27
Helicase and polymerase-containing protein TEBICHI
trEMBL
tr|A0A067KKI7|A0A067KKI7_JATCU
0
Uncharacterized protein {ECO:0000313|EMBL:KDP36726.1}
TAIR10
AT1G20960.2
0
U5 small nuclear ribonucleoprotein helicase, putative
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000005
gene
31441879
31449867
+
GWHAAZE00000005
mRNA
31441879
31449867
+
GWHAAZE00000005
exon
31441879
31444458
+
GWHAAZE00000005
exon
31444536
31444850
+
GWHAAZE00000005
exon
31446205
31446594
+
GWHAAZE00000005
exon
31446705
31447370
+
GWHAAZE00000005
exon
31447456
31449867
+
GWHAAZE00000005
CDS
31441879
31444458
+
GWHAAZE00000005
CDS
31444536
31444850
+
GWHAAZE00000005
CDS
31446205
31446594
+
GWHAAZE00000005
CDS
31446705
31447370
+
GWHAAZE00000005
CDS
31447456
31449867
+
Transcript Sequence
>GWHTAAZE019104 ATGGCAAATCTGGGTGGTGGTGCGGAGGCACACGCCCGATTCAAGCAGTATGAATATAGAGCTAACTCTAGTCTTGTACTGACCACCGACTCTCGCCCTCGTGACACGCATGAGCCCACGGGCGAGCCGGAGTCCCTGTATGGGAAGATTGACCCTAGGACTTTTGGGGACCGGGCATATAGGGGGAGGCCTGCTGAACTGGATGAGAAAATAAAGAAATCGAAGAAGAAGAAGGAACGTGAACAGCTGGATTCCGAACCTATGCCCAAGAGCAAGAGAAGACGACTTCAAGAAGAGAGCGTATTGTCTTCTACCGACGAAGGGGTTTACCAGCCTAAGACTAAGGAGACAAGGGCTGCGTACGAGGCGATGCTTAGTGTCATTCAGCAGCAGTTGGGCGGGCAGCCTCTGAATATAGTTAGTGGGGCTGCCGATGAAATATTGGCCGTCCTCAAGAATGAAACAGTTAAGAACCCAGACAAGAAAAAAGAGATTGAGAAGCTTTTGAACCCAATACCGAGTCATGTATTTGATCAGCTGGTATCTATTGGGAGGCTTATCACAGATTATCAAGATGGTGGGGGTGACGCAGCTGGGGCTGCTGCAACAAATCCCGATGATGCCCTTGACGATGACGTTGGTGTCGCTGTTGAGTTCGAAGAGAACGAAGAGGAGGAAGAAGAGAGTGACCTCGATATGGTACAAGAGGAAGACGAGGAGGAAGATGATGCACTTGATAGGAATGGCACTGGGGCCATGCAGATGGGTGGCGGTATCGATGATGAGGACATGCAGGAAGCTAATCAGGGCATGACCCTAAATGTCCAGGACATTGATGCTTATTGGCTTCAGAGGAAGATCTCTCATGCTTATGAGCAACAGATTGATCCCCAGCAAAGCCAGAAGCTTGCTGAAGAGGTACTCAAAATTCTAGCTGAAGGCGATGATCGGGAAGTTGAAAACAAGCTAGTGATGCATCTCCAATTTGACAAGTTCCCTCTTATTAAGTTTCTGTTGCGGAACCGTGTGAAGATTGTGTGGTGTACCCGTCTAGCAAGGGCCGAAGACCAAGATGAGAGGAAAAAGATTGAAGAGGAAATGATGGGATTGGGTCCAGATTTGGCTGCGATACTGGAGCAATTGCATGCTACAAGGGCAACTGCTAAAGAGAGGCAGAAGAACTTGGAGAAAAGCATAAGAGAAGAGGCTCGTAGATTGAAGGATGAGAGTGGCGGAGATGGGGACCAGGATCGGGACCGGGATCGGGATCGAAGGGGGCTTGTGGATAGAGATGCTGACAATGGTTGGTTGAAGGGGCAGCGCCAGTTGCTCGATCTCGACAGCATTGCATTTAACCAAGGTGGCCTACTGATGGCTAATAAGAAGTGTGAACTCCCTTCGGGGTCTTACAGGAACCTAAACAAGGGATACGAAGAAGTTCACGTGCCAGCTTTGAAGCCAAAACCACTTGCTCCTGGTGAAGAGCTTATAAAGGTTTCTGCCATGCCAGACTGGGCACAGCCGGCCTTTGAAGGAATGACCCAGTTGAACAGGGTCCAGAGCAGAGTGTATGAGACTGCCCTTTTCTCAGCAGAGAATATTTTACTTTGTGCTCCCACTGGGGCTGGGAAGACTAATGTTGCAATGCTCACAATACTTCAGCAGATCGCATTGAATAGGAATGAAGATGGTTCATTCAACCATAGCGGTTACAAAATTGTTTATGTTGCACCTATGAAAGCACTTGTTGCTGAAGTGGTTGGCAATTTGTCTAATCGTTTGCGGCACTACGATGTCAAGGTGAAGGAGCTCAGTGGAGATCAGACACTGACCCGCCAACAAATTGAAGAAACTCAGATTATTGTTACTACTCCAGAAAAGTGGGATATCATAACAAGAAAATCAGGAGATCGCACCTATACACAGCTTGTGAAACTTCTTATCGTTGATGAGATTCATCTTCTACATGATAACAGAGGACCTGTATTGGAAAGTATTGTTGCAAGAACTGTTAGGCAAATTGAGACAACAAAGGAGCACATTAGACTGGTTGGATTATCTGCCACACTCCCTAATTATGAAGACGTGGCTTTGTTTTTGCGAGTTGATTTGAATAAAGGTCTCTTCCATTTTGACAATAGCTACAGACCCTGCCCTCTTGCTCAACAGTATATCGGTATCTCGGTAAAGAAGCCCCTGCAAAGATTTCAGTTGATGAATGATGTTTGTTATGAAAAGGTAATTGGCGTAGCTGGAAAGCATCAAGTTCTTATTTTTGTTCACTCAAGGAAAGAAACTGCCAAGACAGCTCGTGCAATACGAGATTCTGCACTTGCTAATGACACACTTGGCAGATTCTTGAAAGAGGATAGCGCGAGCCGTGAAATTCTTCACAGTCATACCGAACTGGTAAAGAGCAATGATCTTAAGGACCTGTTGCCATATGGTTTTGCAGTTCACCATGCAGGGATGGCCAGGGCTGACCGTCAGCTTGTTGAGGATCTATTTGCTGATGGACATGTCCAAGTACTGGTTTCCACGGCGACACTTGCTTGGGGTGTTAATTTACCTGCTCACACTATGTTGGGACGTGCTGGAAGGCCACAATACGACTCTTATGGAGAAGGAATAATAATAACTGGACATAGTGAACTGCAGTATTATCTTTCTTTAATGAATCAACAGCTTCCTATTGAAAGTCAGTTTGTGTCCAAATTGGCTGATCAGTTGAATGCAGAGATTGTCCTTGGGACTGTTCAAAATGCGAAAGAGGCATGCAACTGGCTAAGCTACACTTACTTATATGTCCGCATGTTACGTAATCCTCTTCTTTATGGGTTAGCTTCTGATGCTCTTACAAGAGATATATTATTGGAGGAAAGGAGAGCTGATCTGGTTCATTCTGCGGCGACAATATTGGACAAGAATAACCTGGTAAAGTATGATAGGAAAAGTGGGTATTTCCAGGTCACTGACTTGGGGCGCATTGCTAGTTATTACTATATAACTCATGGGACAATATCCACATACAATGAGCATTTGAAGCCAACTATGGGTGACATTGAACTTTGCCAGTTGTTTTCACTCAGTGAGGAATTCAAATATGTCACTGTGAGGCAAGATGAGAAGATGGAACTGGCAAAGCTTTTAGATCGCGTACCCATTCCTGTCAAGGAAAGTTTGGAAGAGCCTAGTGCCAAGATCAATGTTTTACTCCAAGCATATATTTCTCAACTAAAGCTTGAAGGACTTTCTCTAACATCTGACATGGTATTCATAACTCAGAGTGCTGGACGTCTTATGCGAGCGCTTTTTGAGATTGTTTTGAAAAGAGGATGGGCGCAGTTAACTGAGAAGGCTCTGAACTTGTGCAAAATGGTTAACAAAAGGATGTGGAGTGTACAAACTCCACTTCGCCAGTTCAATGGGATCCCAAATGAAATTTTGATGAAGTTGGAGAAGAAAGATTTGGCTTGGGAAAGGTATTATGATCTCTCACCACAGGAGATTGGAGAGCTCATTCGGTTTCCTAAGATGGGAAGAAACCTTCACAAGTTCATTCACCAGTTCCCCAAACTCAACTTGGCAGCTCATGTTCAGCCAATAACTCGTACTGTTTTGAGGGTTGAGCTCACTATTACCCCTGACTTTCAGTGGGAGGACAAAGTTCATGGCTATGTGGAGCCGTTTTGGGTTATTGTGGAGGATAATGATGGGGAATATGTTCTCCATCATGAATATTTCATGCTGAAGAAACAGTATATTGACGAGGACCACACTTTAAATTTCACAGTTCCAATTTATGAACCACTGCCTCCTCAGTACTTCATCCGTGTTGTGTCAGACAGATGGCTTGGGTCACAGTCTGTTTTGCCCGTTTCTTTCAGGCACCTTATCCTGCCTGAGAAATATCCCCCGCCAACTGAGTTGTTAGACCTGCAACCATTGCCCGTCTTGTACAACACGGACGATAATGTCTTGGTTGCCGCACCTACTGGGAGTGGGAAGACCATATGTGCAGAATTCGCCATACTGAGGAACCATCAGAAAGGACCTGATGGTGTCATGCGTGCTGTGTATATTGCTCCTGTCGAAGCTCTTGCAAAGGAACGGTATAATGACTGGAAGAGGAAGTTTGGAGAGGGTCTTGGGATGAAAGTTGTTGAATTGACTGGTGAGACAGCAACAGATCTGAAACTGCTCGAGAAGGGTCAAGTAATAATCAGCACTCCTGATAAATGGGATGCTTTATCGCGCCGATGGAAGCAGCGGAAGCACATTCAGCAAGTTAGCCTATTCATCATTGACGAACTGCATCTGATTGGGGGTCAAGGCGGTCCTGTCTTGGAGGTGATAGTCTCTAGGATGAGATATATTGCAAGCCAGGGTGAGAATAAGATACGTATTGTAGCTTTGTCAACTTCCCTTGCAAATGCAAAGGATCTTGGGGAATGGATTGGTGCTACATCTCATGGTCTATTCAATTTTCCTCCTGGTGTCAGGCCAGTGCCCTTGGAGATACACATTCAGGGCATTGATATAGCCAACTTTGAAGCGAGGATGCAAGCGATGACCAAGCCCACATATACCTCAATTGTCCAGCATGCGAAAAGTGGGAAACCTGCCATTGTATTTGTTCCTACTAGGAAGCATGCTCGCCTTACTGCTGTGGACCTGATGACGTATTCAAGCGTGGACAGTGGAGACAAGCCTATTTTCTTACTACAGCTTGCTGGAGATCTAGAGCCTTTTATTAGCAGAATTAAGGAACCTATGTTGAGAGAGACGCTGCAATACGGGGTGGGATATTTGCATGAAGGTTTGACTACAACAGATCAGGATATTGTGAGAACACTTTTTGAAACTGGCTGGATTCAAGTTTGTGTAATTAGCAGTTCAATGTGTTGGGGAGCTCCCCTTCGTGCGCACTTGGTGGTTGTGATGGGGACACAGTTCTATGATGGGCGAGAAAATGCTCACACTGATTATCCAGTAACTGATCTTTTGCAGATGATGGGTCATGCTAGTCGACCTCTTGTGGATAACTCTGGCAAGTGTGTGATATTTTGCCATGCACCACGTAAAGAATACTACAAGAAGTTTTTGTATGAAGCATTCCCAGTCGAAAGCCATTTGCACCACTTCCTGCATGATAATTTGAATGCAGAGGTGGTTGTTGGAGTAATCACGAGCAAGCAAGACGCTGTGGATTATCTCACATGGACATTCATGTACAGGAGGCTCACCCAGAATCCAAACTACTACAATCTTCAGGGTGTTAGTCAAAGGCATCTTTCCGATCACCTATCGGAGCTTGTGGAGAACACACTAAGTGATTTGGAAGCAAGTAAATGTGTTGCTATAGAGGAAGACATTTATCTCTCCCCTTCAAACCTTGGCCTGATAGCATCGTATTACTATATCAGTTACACAACCATAGAACGTTTCAGTTCTTCTTTGACTTCCAAAACAAAGTTGAAGGGTCTTCTAGAGATTCTGGCTTCTGCTTCAGAGTACGAACTTCTTCCAATACGCCCTGGGGAAGAAGAGTTGTTAAGAAGGTTGATCAATCACCAGCGGTTCTCCTTTGACAACCCCAAATGCACTGACCCGCATGTTAAAGCAAATGCACTGCTACAAGCCCACTTCTCGAGGCAGCAGTTGGGTGGGAATTTGGCATCTGACCAGCAAGAGGTTCTGCTTTCTGCCAGTAGGCTTCTTCAAGCAATGGTTGATGTTATTTCCAGCAATGGCTGGCTAAGCTTGGCACTTCTTACTATGGAAGTGAGCCAGATGGTGACTCAGGGTATGTGGGAGCGTGACTCCATGCTTCTACAGCTTCCACACTTCACAAAGGACCTGGTTAAGCAGTGCCAAGAAAAGGGCATAGAATCCGTGTTTGATCTGTTGGAGATGGAGGACAATGAGAGGCGGGAGCTGTTGCAGATGTCAGACTCTCAGTTGATGGACATTGCCAAAACTTGCAACCGATTCCCTAACATCGATTTGACATATGAGGTGGACAGTGAGAACGCGAGGGCCGGGGAAGACATAAGTATGGTGGTGACTCTTGAGCGTGATCTCGAGGGAAGGACAGAGGTGGGACCCGTTGATGCCCCGAGATATCCCAAAGCCAAAGAAGAAGGATGGTGGCTAGTGGTTGGTGATACTAAAAGCAACCAGGTCCTAGCCATCAAAAGGGTACCCCAGCAAAGGAAGTCAAAGGTGAAGCTTGAGTTTGCTGCTCCTGGAGAAGCTGGAAAAAAGACGTATGCTCTTTATTTCATGTGTGATTCTTACATGGGCTGTGACCAGGAGTATAACGTTGTCGTTGATGTGAAAGAACCATCTCCTGAAGATTAG
Network for GWHGAAZE019082
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF18149.2
Helicase_PWI
272
381
6.70E-37
PF00270.30
DEAD
518
693
3.80E-28
PF02889.17
Sec63
991
1293
2.70E-91
PF00270.30
DEAD
1322
1478
1.20E-22
PF02889.17
Sec63
1796
2109
2.30E-75
Protein Sequence
>GWHPAAZE019093 MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPRTFGDRAYRGRPAELDEKIKKSKKKKEREQLDSEPMPKSKRRRLQEESVLSSTDEGVYQPKTKETRAAYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNETVKNPDKKKEIEKLLNPIPSHVFDQLVSIGRLITDYQDGGGDAAGAAATNPDDALDDDVGVAVEFEENEEEEEESDLDMVQEEDEEEDDALDRNGTGAMQMGGGIDDEDMQEANQGMTLNVQDIDAYWLQRKISHAYEQQIDPQQSQKLAEEVLKILAEGDDREVENKLVMHLQFDKFPLIKFLLRNRVKIVWCTRLARAEDQDERKKIEEEMMGLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDGDQDRDRDRDRRGLVDRDADNGWLKGQRQLLDLDSIAFNQGGLLMANKKCELPSGSYRNLNKGYEEVHVPALKPKPLAPGEELIKVSAMPDWAQPAFEGMTQLNRVQSRVYETALFSAENILLCAPTGAGKTNVAMLTILQQIALNRNEDGSFNHSGYKIVYVAPMKALVAEVVGNLSNRLRHYDVKVKELSGDQTLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLLIVDEIHLLHDNRGPVLESIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLNKGLFHFDNSYRPCPLAQQYIGISVKKPLQRFQLMNDVCYEKVIGVAGKHQVLIFVHSRKETAKTARAIRDSALANDTLGRFLKEDSASREILHSHTELVKSNDLKDLLPYGFAVHHAGMARADRQLVEDLFADGHVQVLVSTATLAWGVNLPAHTMLGRAGRPQYDSYGEGIIITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWLSYTYLYVRMLRNPLLYGLASDALTRDILLEERRADLVHSAATILDKNNLVKYDRKSGYFQVTDLGRIASYYYITHGTISTYNEHLKPTMGDIELCQLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLMRALFEIVLKRGWAQLTEKALNLCKMVNKRMWSVQTPLRQFNGIPNEILMKLEKKDLAWERYYDLSPQEIGELIRFPKMGRNLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFQWEDKVHGYVEPFWVIVEDNDGEYVLHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIRVVSDRWLGSQSVLPVSFRHLILPEKYPPPTELLDLQPLPVLYNTDDNVLVAAPTGSGKTICAEFAILRNHQKGPDGVMRAVYIAPVEALAKERYNDWKRKFGEGLGMKVVELTGETATDLKLLEKGQVIISTPDKWDALSRRWKQRKHIQQVSLFIIDELHLIGGQGGPVLEVIVSRMRYIASQGENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQGIDIANFEARMQAMTKPTYTSIVQHAKSGKPAIVFVPTRKHARLTAVDLMTYSSVDSGDKPIFLLQLAGDLEPFISRIKEPMLRETLQYGVGYLHEGLTTTDQDIVRTLFETGWIQVCVISSSMCWGAPLRAHLVVVMGTQFYDGRENAHTDYPVTDLLQMMGHASRPLVDNSGKCVIFCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEVVVGVITSKQDAVDYLTWTFMYRRLTQNPNYYNLQGVSQRHLSDHLSELVENTLSDLEASKCVAIEEDIYLSPSNLGLIASYYYISYTTIERFSSSLTSKTKLKGLLEILASASEYELLPIRPGEEELLRRLINHQRFSFDNPKCTDPHVKANALLQAHFSRQQLGGNLASDQQEVLLSASRLLQAMVDVISSNGWLSLALLTMEVSQMVTQGMWERDSMLLQLPHFTKDLVKQCQEKGIESVFDLLEMEDNERRELLQMSDSQLMDIAKTCNRFPNIDLTYEVDSENARAGEDISMVVTLERDLEGRTEVGPVDAPRYPKAKEEGWWLVVGDTKSNQVLAIKRVPQQRKSKVKLEFAAPGEAGKKTYALYFMCDSYMGCDQEYNVVVDVKEPSPED
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K12854
SNRNP200, BRR2
Spliceosome
map03040
Gene Ontology
GO term
Ontology
Name
GO:0003676
molecular_function
nucleic acid binding
GO:0005524
molecular_function
ATP binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
23.295
SRR3591706
second leaf
18.735
SRR3591707
mature leaf
18.831
SRR3591708
Shoot apex
27.153
SRR3591709
Stem
23.641
SRR3591710
White floral bud
26.378
SRR3591711
White flower
31.666
SRR3591712
Green floral bud
28.494
SRR3591713
Yellow flower
22.815
SRP173429
SRR8316895
Juvenile bud stage
15.997
SRR8316896
Juvenile bud stage
21.683
SRR8316897
Juvenile bud stage
10.183
SRR8316894
Third green stage
11.009
SRR8316900
Third green stage
24.185
SRR8316901
Third green stage
22.176
SRR8316898
Complete white stage
4.280
SRR8316899
Complete white stage
20.993
SRR8316903
Complete white stage
15.183
SRR8316902
Silver flowering stage
7.068
SRR8316904
Silver flowering stage
12.216
SRR8316905
Silver flowering stage
5.513
SRR8316906
Gold flowering stage
19.347
SRR8316907
Gold flowering stage
17.190
SRR8316908
Gold flowering stage
19.940
SRP132670
SRR6706286
Control
24.118
SRR6706287
Light intensity 50%
25.289
SRR6706288
Light intensity 20%
26.301
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
12.955
CNS0095593
Slightly white alabastrum(diploid) 2
13.831
CNS0095594
Slightly white alabastrum(diploid) 3
12.613
CNS0095595
Whole white alabastrum(diploid) 2
14.428
CNS0095596
Whole white alabastrum(diploid) 3
10.237
CNS0095597
Whole white alabastrum(diploid) 4
11.821
CNS0095598
Silvery flower (diploied) 1
20.781
CNS0095599
Silvery flower (diploied) 2
16.945
CNS0095600
Silvery flower (diploied) 3
33.665
CNS0095601
Golden flower (diploid) 1
16.961
CNS0095602
Golden flower (diploid) 2
37.764
CNS0095603
Golden flower (diploid) 3
35.736
CNS0095604
Slightly white alabastrum(tetraploid) 1
17.003
CNS0095605
Slightly white alabastrum(tetraploid) 2
12.543
CNS0095606
Slightly white alabastrum(tetraploid) 3
43.848
CNS0095607
Whole white alabastrum(tetraploid) 1
11.080
CNS0095608
Whole white alabastrum(tetraploid) 2
8.924
CNS0095609
Whole white alabastrum(tetraploid) 3
27.389
CNS0095610
Silvery flower (tetraploid) 1
29.187
CNS0095611
Silvery flower (tetraploid) 2
30.946
CNS0095612
Silvery flower (tetraploid) 3
25.398
CNS0095613
Golden flower (tetraploid) 1
11.636
CNS0095614
Golden flower (tetraploid) 2
24.091
CNS0095615
Golden flower (tetraploid) 3
28.219
CRA001975
CRR073297
Stem 1
36.270
CRR073298
Stem 2
35.072
CRR073299
Stem 3
30.564
CRR073300
Leaf 1
37.008
CRR073301
Leaf 2
31.201
CRR073302
Leaf 3
20.245
CRR073303
Juvenile bud 1
26.856
CRR073304
Juvenile bud 2
17.204
CRR073305
Juvenile bud 3
45.512
CRR073306
Third green 1
11.209
CRR073307
Third green 2
8.079
CRR073308
Third green 3
12.709
CRR073309
Second white 1
16.102
CRR073310
Second white 2
16.747
CRR073311
Second white 3
22.680
CRR073312
Silver flowering 1
19.202
CRR073313
Silver flowering 2
21.170
CRR073314
Silver flowering 3
15.845
CRR073315
Gold flowering 1
14.484
CRR073316
Gold flowering 2
23.319
CRR073317
Gold flowering 3
24.464
CRR073318
Tawny withering 1
20.596
CRR073319
Tawny withering 2
16.544
CRR073320
Tawny withering 3
18.166