Detail information of GWHGAAZE019082


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266580.10PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera]
Swissprottr|Q588V7|TEB_ARATH2E-27Helicase and polymerase-containing protein TEBICHI
trEMBLtr|A0A067KKI7|A0A067KKI7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP36726.1}
TAIR10AT1G20960.20U5 small nuclear ribonucleoprotein helicase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3144187931449867+
GWHAAZE00000005mRNA3144187931449867+
GWHAAZE00000005exon3144187931444458+
GWHAAZE00000005exon3144453631444850+
GWHAAZE00000005exon3144620531446594+
GWHAAZE00000005exon3144670531447370+
GWHAAZE00000005exon3144745631449867+
GWHAAZE00000005CDS3144187931444458+
GWHAAZE00000005CDS3144453631444850+
GWHAAZE00000005CDS3144620531446594+
GWHAAZE00000005CDS3144670531447370+
GWHAAZE00000005CDS3144745631449867+
Transcript Sequence

Network for GWHGAAZE019082

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18149.2Helicase_PWI2723816.70E-37
PF00270.30DEAD5186933.80E-28
PF02889.17Sec6399112932.70E-91
PF00270.30DEAD132214781.20E-22
PF02889.17Sec63179621092.30E-75
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12854SNRNP200, BRR2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.295
SRR3591706second leaf18.735
SRR3591707mature leaf18.831
SRR3591708Shoot apex27.153
SRR3591709Stem23.641
SRR3591710White floral bud26.378
SRR3591711White flower31.666
SRR3591712Green floral bud28.494
SRR3591713Yellow flower22.815
SRP173429 SRR8316895Juvenile bud stage 15.997
SRR8316896Juvenile bud stage 21.683
SRR8316897Juvenile bud stage 10.183
SRR8316894Third green stage 11.009
SRR8316900Third green stage 24.185
SRR8316901Third green stage 22.176
SRR8316898Complete white stage 4.280
SRR8316899Complete white stage 20.993
SRR8316903Complete white stage 15.183
SRR8316902Silver flowering stage7.068
SRR8316904Silver flowering stage12.216
SRR8316905Silver flowering stage5.513
SRR8316906Gold flowering stage 19.347
SRR8316907Gold flowering stage 17.190
SRR8316908Gold flowering stage 19.940
SRP132670SRR6706286Control24.118
SRR6706287Light intensity 50%25.289
SRR6706288Light intensity 20%26.301
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.955
CNS0095593Slightly white alabastrum(diploid) 213.831
CNS0095594Slightly white alabastrum(diploid) 312.613
CNS0095595Whole white alabastrum(diploid) 214.428
CNS0095596Whole white alabastrum(diploid) 310.237
CNS0095597Whole white alabastrum(diploid) 411.821
CNS0095598Silvery flower (diploied) 120.781
CNS0095599Silvery flower (diploied) 216.945
CNS0095600Silvery flower (diploied) 333.665
CNS0095601Golden flower (diploid) 116.961
CNS0095602Golden flower (diploid) 237.764
CNS0095603Golden flower (diploid) 335.736
CNS0095604Slightly white alabastrum(tetraploid) 117.003
CNS0095605Slightly white alabastrum(tetraploid) 212.543
CNS0095606Slightly white alabastrum(tetraploid) 343.848
CNS0095607Whole white alabastrum(tetraploid) 111.080
CNS0095608Whole white alabastrum(tetraploid) 28.924
CNS0095609Whole white alabastrum(tetraploid) 327.389
CNS0095610Silvery flower (tetraploid) 129.187
CNS0095611Silvery flower (tetraploid) 230.946
CNS0095612Silvery flower (tetraploid) 325.398
CNS0095613Golden flower (tetraploid) 111.636
CNS0095614Golden flower (tetraploid) 224.091
CNS0095615Golden flower (tetraploid) 328.219
CRA001975CRR073297Stem 136.270
CRR073298Stem 235.072
CRR073299Stem 330.564
CRR073300Leaf 137.008
CRR073301Leaf 231.201
CRR073302Leaf 320.245
CRR073303Juvenile bud 126.856
CRR073304Juvenile bud 217.204
CRR073305Juvenile bud 345.512
CRR073306Third green 111.209
CRR073307Third green 28.079
CRR073308Third green 312.709
CRR073309Second white 116.102
CRR073310Second white 216.747
CRR073311Second white 322.680
CRR073312Silver flowering 119.202
CRR073313Silver flowering 221.170
CRR073314Silver flowering 315.845
CRR073315Gold flowering 114.484
CRR073316Gold flowering 223.319
CRR073317Gold flowering 324.464
CRR073318Tawny withering 120.596
CRR073319Tawny withering 216.544
CRR073320Tawny withering 318.166