Detail information of GWHGAAZE019080


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002266580.10PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase [Vitis vinifera]
Swissprottr|Q588V7|TEB_ARATH1E-28Helicase and polymerase-containing protein TEBICHI
trEMBLtr|A0A067KKI7|A0A067KKI7_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP36726.1}
TAIR10AT1G20960.20U5 small nuclear ribonucleoprotein helicase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3139719931405027+
GWHAAZE00000005mRNA3139719931405027+
GWHAAZE00000005exon3139719931400150+
GWHAAZE00000005exon3140130931401698+
GWHAAZE00000005exon3140181931403892+
GWHAAZE00000005exon3140398231405027+
GWHAAZE00000005CDS3139719931400150+
GWHAAZE00000005CDS3140130931401698+
GWHAAZE00000005CDS3140181931403892+
GWHAAZE00000005CDS3140398231405027+
Transcript Sequence

Network for GWHGAAZE019080

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18149.2Helicase_PWI2703794.10E-35
PF00270.30DEAD5116861.60E-27
PF00271.32Helicase_C7948866.80E-07
PF02889.17Sec63100913123.00E-88
PF00270.30DEAD135715262.70E-24
PF02889.17Sec63181321276.40E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12854SNRNP200, BRR2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.475
SRR3591706second leaf1.263
SRR3591707mature leaf1.229
SRR3591708Shoot apex1.697
SRR3591709Stem1.472
SRR3591710White floral bud2.870
SRR3591711White flower2.643
SRR3591712Green floral bud3.920
SRR3591713Yellow flower2.190
SRP173429 SRR8316895Juvenile bud stage 1.806
SRR8316896Juvenile bud stage 2.622
SRR8316897Juvenile bud stage 0.891
SRR8316894Third green stage 2.088
SRR8316900Third green stage 10.461
SRR8316901Third green stage 8.130
SRR8316898Complete white stage 0.844
SRR8316899Complete white stage 6.966
SRR8316903Complete white stage 2.162
SRR8316902Silver flowering stage1.574
SRR8316904Silver flowering stage2.843
SRR8316905Silver flowering stage1.310
SRR8316906Gold flowering stage 4.496
SRR8316907Gold flowering stage 3.705
SRR8316908Gold flowering stage 3.627
SRP132670SRR6706286Control7.081
SRR6706287Light intensity 50%7.849
SRR6706288Light intensity 20%9.006
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.183
CNS0095593Slightly white alabastrum(diploid) 23.557
CNS0095594Slightly white alabastrum(diploid) 31.659
CNS0095595Whole white alabastrum(diploid) 23.515
CNS0095596Whole white alabastrum(diploid) 33.194
CNS0095597Whole white alabastrum(diploid) 42.760
CNS0095598Silvery flower (diploied) 12.171
CNS0095599Silvery flower (diploied) 21.723
CNS0095600Silvery flower (diploied) 34.529
CNS0095601Golden flower (diploid) 11.356
CNS0095602Golden flower (diploid) 23.522
CNS0095603Golden flower (diploid) 33.904
CNS0095604Slightly white alabastrum(tetraploid) 12.983
CNS0095605Slightly white alabastrum(tetraploid) 21.735
CNS0095606Slightly white alabastrum(tetraploid) 37.098
CNS0095607Whole white alabastrum(tetraploid) 12.013
CNS0095608Whole white alabastrum(tetraploid) 22.163
CNS0095609Whole white alabastrum(tetraploid) 37.045
CNS0095610Silvery flower (tetraploid) 16.761
CNS0095611Silvery flower (tetraploid) 27.584
CNS0095612Silvery flower (tetraploid) 34.420
CNS0095613Golden flower (tetraploid) 12.809
CNS0095614Golden flower (tetraploid) 26.052
CNS0095615Golden flower (tetraploid) 34.998
CRA001975CRR073297Stem 15.475
CRR073298Stem 25.592
CRR073299Stem 34.298
CRR073300Leaf 113.299
CRR073301Leaf 211.185
CRR073302Leaf 37.614
CRR073303Juvenile bud 111.567
CRR073304Juvenile bud 25.405
CRR073305Juvenile bud 319.004
CRR073306Third green 11.162
CRR073307Third green 20.931
CRR073308Third green 31.523
CRR073309Second white 12.694
CRR073310Second white 22.735
CRR073311Second white 33.724
CRR073312Silver flowering 11.985
CRR073313Silver flowering 22.263
CRR073314Silver flowering 31.938
CRR073315Gold flowering 11.099
CRR073316Gold flowering 21.782
CRR073317Gold flowering 31.723
CRR073318Tawny withering 12.286
CRR073319Tawny withering 21.658
CRR073320Tawny withering 31.641