Gene detail

Detail information of GWHGAAZE019060

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010579.1	1.8496E-122	Glutathione S-transferase 2 isoform 3 [Theobroma cacao]
Swissprot	tr\|P57108\|GSTZ_EUPES	2E-117	Glutathione S-transferase zeta class
trEMBL	tr\|A0A061FX53\|A0A061FX53_THECC	7E-123	Glutathione S-transferase 2 isoform 3 {ECO:0000313\|EMBL:EOY19389.1}
TAIR10	AT2G02390.1	5E-77	glutathione S-transferase zeta 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	30913480	30918353	+
GWHAAZE00000005	mRNA	30913480	30918353	+
GWHAAZE00000005	exon	30913480	30913573	+
GWHAAZE00000005	exon	30913677	30913733	+
GWHAAZE00000005	exon	30914762	30914847	+
GWHAAZE00000005	exon	30914959	30915030	+
GWHAAZE00000005	exon	30916413	30916466	+
GWHAAZE00000005	exon	30916567	30916642	+
GWHAAZE00000005	exon	30917252	30917313	+
GWHAAZE00000005	exon	30917820	30917879	+
GWHAAZE00000005	exon	30918243	30918353	+
GWHAAZE00000005	CDS	30913480	30913573	+
GWHAAZE00000005	CDS	30913677	30913733	+
GWHAAZE00000005	CDS	30914762	30914847	+
GWHAAZE00000005	CDS	30914959	30915030	+
GWHAAZE00000005	CDS	30916413	30916466	+
GWHAAZE00000005	CDS	30916567	30916642	+
GWHAAZE00000005	CDS	30917252	30917313	+
GWHAAZE00000005	CDS	30917820	30917879	+
GWHAAZE00000005	CDS	30918243	30918353	+

Transcript Sequence
>GWHTAAZE019082 GCGACTAGTGTTGAGGAAACGAAGAAGCTGAAGCTTTATTCTTATTGGCGGAGTTCTTGCTCTTGCCGTGTTCGTATCGGCCTCAATTTGAAAGGGCTTGATTATGAGTATAAAGCTGTTAACCTGCTCAAAGGAGAACAATTTAGTCCTGAGTTTTTGAAGCTCAATCCTATTGGTTATGTGCCGGTGCTGGAAGATGATGGTATAAAAATTGCAGACTCTTTTGCCATCTTATTGTATTTGGAAGAGAAGTATCCTCAGCATCCATTGTTACCTTGTGATCTTCAGAAAAAGGCAATTAATTACCAGGCTGCAAATATTGTTTCCTCCAGCATACAGCCTCTCCAGAATTTAGCTATACTGAAGTATATTGGCGAAAAAGTTAGTCCTGATGAAAAGCTTCCTTGGGTTCAACATCATATCGGGAATGGCTTTGCAGCTCTTGAGAAGTTATTGAAGGACTATGCTGGCAAATATGCTACCGGAGATGAAGTTTTCTTGGCCGATTTGTTTATTGCACCCCAGATCCATGGAGCAATCAAACGGTTCAGCCTTGACATGACAAAGTACCCTCTTCTATCTAGGTTGAATGAGGCATACGAAGAGCTACCAGCCTTCAAAGATGCAATGCCAGAAAATCAGCCGGATACACCAGCTGAGGAAAGGGGTTGA

Network for GWHGAAZE019060

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02798.21	GST_N	9	82	2.10E-18
PF14497.7	GST_C_3	131	208	2.30E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01800	maiA, GSTZ1	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Tyrosine metabolism	map00350
		Styrene degradation	map00643

Gene Ontology

GO term	Ontology	Name
GO:0009072	biological_process	aromatic amino acid family metabolic process
GO:0005737	cellular_component	cytoplasm
GO:0003824	molecular_function	catalytic activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.785
	SRR3591706	second leaf	29.101
	SRR3591707	mature leaf	42.996
	SRR3591708	Shoot apex	34.180
	SRR3591709	Stem	50.664
	SRR3591710	White floral bud	30.093
	SRR3591711	White flower	36.387
	SRR3591712	Green floral bud	45.793
	SRR3591713	Yellow flower	27.542
SRP173429	SRR8316895	Juvenile bud stage	57.243
	SRR8316896	Juvenile bud stage	89.094
	SRR8316897	Juvenile bud stage	28.277
	SRR8316894	Third green stage	32.753
	SRR8316900	Third green stage	130.169
	SRR8316901	Third green stage	121.803
	SRR8316898	Complete white stage	95.319
	SRR8316899	Complete white stage	199.237
	SRR8316903	Complete white stage	96.855
	SRR8316902	Silver flowering stage	93.350
	SRR8316904	Silver flowering stage	97.849
	SRR8316905	Silver flowering stage	48.665
	SRR8316906	Gold flowering stage	164.148
	SRR8316907	Gold flowering stage	156.631
	SRR8316908	Gold flowering stage	120.486
SRP132670	SRR6706286	Control	78.425
	SRR6706287	Light intensity 50%	78.073
	SRR6706288	Light intensity 20%	86.298
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	68.814
	CNS0095593	Slightly white alabastrum(diploid) 2	56.309
	CNS0095594	Slightly white alabastrum(diploid) 3	80.814
	CNS0095595	Whole white alabastrum(diploid) 2	69.247
	CNS0095596	Whole white alabastrum(diploid) 3	77.840
	CNS0095597	Whole white alabastrum(diploid) 4	86.040
	CNS0095598	Silvery flower (diploied) 1	71.164
	CNS0095599	Silvery flower (diploied) 2	82.148
	CNS0095600	Silvery flower (diploied) 3	126.428
	CNS0095601	Golden flower (diploid) 1	75.383
	CNS0095602	Golden flower (diploid) 2	88.175
	CNS0095603	Golden flower (diploid) 3	88.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	46.591
	CNS0095605	Slightly white alabastrum(tetraploid) 2	44.022
	CNS0095606	Slightly white alabastrum(tetraploid) 3	56.651
	CNS0095607	Whole white alabastrum(tetraploid) 1	45.580
	CNS0095608	Whole white alabastrum(tetraploid) 2	54.365
	CNS0095609	Whole white alabastrum(tetraploid) 3	85.304
	CNS0095610	Silvery flower (tetraploid) 1	90.002
	CNS0095611	Silvery flower (tetraploid) 2	101.154
	CNS0095612	Silvery flower (tetraploid) 3	86.293
	CNS0095613	Golden flower (tetraploid) 1	48.031
	CNS0095614	Golden flower (tetraploid) 2	73.447
	CNS0095615	Golden flower (tetraploid) 3	40.938
CRA001975	CRR073297	Stem 1	33.558
	CRR073298	Stem 2	34.118
	CRR073299	Stem 3	25.485
	CRR073300	Leaf 1	38.971
	CRR073301	Leaf 2	40.788
	CRR073302	Leaf 3	39.895
	CRR073303	Juvenile bud 1	48.631
	CRR073304	Juvenile bud 2	55.109
	CRR073305	Juvenile bud 3	38.293
	CRR073306	Third green 1	58.511
	CRR073307	Third green 2	42.867
	CRR073308	Third green 3	41.245
	CRR073309	Second white 1	66.066
	CRR073310	Second white 2	49.556
	CRR073311	Second white 3	27.202
	CRR073312	Silver flowering 1	12.923
	CRR073313	Silver flowering 2	15.749
	CRR073314	Silver flowering 3	10.079
	CRR073315	Gold flowering 1	33.720
	CRR073316	Gold flowering 2	32.823
	CRR073317	Gold flowering 3	32.477
	CRR073318	Tawny withering 1	25.893
	CRR073319	Tawny withering 2	35.209
	CRR073320	Tawny withering 3	18.368