Detail information of GWHGAAZE019027


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010659765.12.7076E-120PREDICTED: transcription factor PIF3-like isoform X2 [Vitis vinifera]
Swissprottr|Q9SBC5|PIF3_ARATH2E-50Transcription factor PIF3
trEMBLtr|F6I4I6|F6I4I6_VITVI1E-120Putative uncharacterized protein {ECO:0000313|EMBL:CCB61970.1}
TAIR10AT1G09530.25E-39phytochrome interacting factor 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene3027661830280214-
GWHAAZE00000005mRNA3027661830280214-
GWHAAZE00000005exon3027986430280214-
GWHAAZE00000005exon3027915330279400-
GWHAAZE00000005exon3027867930279086-
GWHAAZE00000005exon3027826730278584-
GWHAAZE00000005exon3027790730278169-
GWHAAZE00000005exon3027771330277810-
GWHAAZE00000005exon3027727030277330-
GWHAAZE00000005exon3027661830276683-
GWHAAZE00000005five_prime_UTR3027986430280214-
GWHAAZE00000005five_prime_UTR3027923230279400-
GWHAAZE00000005CDS3027915330279231-
GWHAAZE00000005CDS3027867930279086-
GWHAAZE00000005CDS3027826730278584-
GWHAAZE00000005CDS3027790730278169-
GWHAAZE00000005CDS3027771330277810-
GWHAAZE00000005CDS3027727030277330-
GWHAAZE00000005CDS3027661830276683-
Transcript Sequence

Network for GWHGAAZE019027

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00010.27HLH3904272.10E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilybHLH

KEGG pathway

KO Enzyme pathway mapID
K12126PIF3 Plant hormone signal transduction map04075
Circadian rhythm - plantmap04712

Gene Ontology

GO term OntologyName
GO:0046983molecular_functionprotein dimerization activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.586
SRR3591706second leaf12.911
SRR3591707mature leaf17.006
SRR3591708Shoot apex5.860
SRR3591709Stem7.731
SRR3591710White floral bud3.454
SRR3591711White flower6.218
SRR3591712Green floral bud2.461
SRR3591713Yellow flower1.700
SRP173429 SRR8316895Juvenile bud stage 2.522
SRR8316896Juvenile bud stage 1.919
SRR8316897Juvenile bud stage 1.126
SRR8316894Third green stage 1.276
SRR8316900Third green stage 3.013
SRR8316901Third green stage 2.937
SRR8316898Complete white stage 0.622
SRR8316899Complete white stage 4.389
SRR8316903Complete white stage 1.119
SRR8316902Silver flowering stage0.164
SRR8316904Silver flowering stage0.689
SRR8316905Silver flowering stage0.167
SRR8316906Gold flowering stage 0.647
SRR8316907Gold flowering stage 0.764
SRR8316908Gold flowering stage 0.949
SRP132670SRR6706286Control0.899
SRR6706287Light intensity 50%1.128
SRR6706288Light intensity 20%1.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.191
CNS0095593Slightly white alabastrum(diploid) 21.176
CNS0095594Slightly white alabastrum(diploid) 31.145
CNS0095595Whole white alabastrum(diploid) 21.170
CNS0095596Whole white alabastrum(diploid) 30.820
CNS0095597Whole white alabastrum(diploid) 41.147
CNS0095598Silvery flower (diploied) 14.479
CNS0095599Silvery flower (diploied) 22.333
CNS0095600Silvery flower (diploied) 32.138
CNS0095601Golden flower (diploid) 13.142
CNS0095602Golden flower (diploid) 23.222
CNS0095603Golden flower (diploid) 33.869
CNS0095604Slightly white alabastrum(tetraploid) 11.600
CNS0095605Slightly white alabastrum(tetraploid) 21.037
CNS0095606Slightly white alabastrum(tetraploid) 33.985
CNS0095607Whole white alabastrum(tetraploid) 10.795
CNS0095608Whole white alabastrum(tetraploid) 20.495
CNS0095609Whole white alabastrum(tetraploid) 32.236
CNS0095610Silvery flower (tetraploid) 12.521
CNS0095611Silvery flower (tetraploid) 21.083
CNS0095612Silvery flower (tetraploid) 30.214
CNS0095613Golden flower (tetraploid) 11.366
CNS0095614Golden flower (tetraploid) 21.641
CNS0095615Golden flower (tetraploid) 31.048
CRA001975CRR073297Stem 10.716
CRR073298Stem 20.841
CRR073299Stem 30.628
CRR073300Leaf 11.028
CRR073301Leaf 21.007
CRR073302Leaf 30.561
CRR073303Juvenile bud 11.073
CRR073304Juvenile bud 20.434
CRR073305Juvenile bud 31.092
CRR073306Third green 10.077
CRR073307Third green 20.055
CRR073308Third green 30.047
CRR073309Second white 10.000
CRR073310Second white 20.127
CRR073311Second white 30.117
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.263
CRR073316Gold flowering 20.527
CRR073317Gold flowering 30.634
CRR073318Tawny withering 10.464
CRR073319Tawny withering 20.674
CRR073320Tawny withering 30.338