Gene detail

Detail information of GWHGAAZE018989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001234871.1	0	auxin response factor 1 [Solanum lycopersicum]
Swissprot	tr\|Q8L7G0\|ARFA_ARATH	0	Auxin response factor 1
trEMBL	tr\|D9I2J0\|D9I2J0_SOLLC	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G59750.4	1E-166	auxin response factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28298450	28309652	-
GWHAAZE00000005	mRNA	28298450	28309652	-
GWHAAZE00000005	exon	28298450	28298824	-
GWHAAZE00000005	exon	28301897	28302621	-
GWHAAZE00000005	exon	28302724	28302895	-
GWHAAZE00000005	exon	28303497	28303572	-
GWHAAZE00000005	exon	28303660	28303779	-
GWHAAZE00000005	exon	28306372	28306455	-
GWHAAZE00000005	exon	28306674	28306838	-
GWHAAZE00000005	exon	28306916	28307021	-
GWHAAZE00000005	exon	28307593	28307677	-
GWHAAZE00000005	exon	28307797	28307949	-
GWHAAZE00000005	exon	28308113	28308169	-
GWHAAZE00000005	exon	28308295	28308390	-
GWHAAZE00000005	exon	28308799	28308911	-
GWHAAZE00000005	exon	28309607	28309652	-
GWHAAZE00000005	CDS	28309607	28309652	-
GWHAAZE00000005	CDS	28308799	28308911	-
GWHAAZE00000005	CDS	28308295	28308390	-
GWHAAZE00000005	CDS	28308113	28308169	-
GWHAAZE00000005	CDS	28307797	28307949	-
GWHAAZE00000005	CDS	28307593	28307677	-
GWHAAZE00000005	CDS	28306916	28307021	-
GWHAAZE00000005	CDS	28306674	28306838	-
GWHAAZE00000005	CDS	28306372	28306455	-
GWHAAZE00000005	CDS	28303660	28303779	-
GWHAAZE00000005	CDS	28303497	28303572	-
GWHAAZE00000005	CDS	28302724	28302895	-
GWHAAZE00000005	CDS	28301897	28302621	-
GWHAAZE00000005	CDS	28298450	28298824	-

Transcript Sequence
>GWHTAAZE019011 ATGGCGCATATTGCTGCAAATCACGTCTCTGGAAGTCCTCGCCCAGGAGCCTCGGATGCTTTGTACAAGGAACTGTGGCACTCAAGTGCTGGACCGCTTGTCACGGTTCCTTGTGAAGGAGAACGGGTTTATTACTTTCCGCAAGGTCACATGGAACAGCTTGAAGCATCGACACATCAGGGATTAGATCAACAACTTCCTTCTTTCAACTTACCAGCCAAAATACTCTGCAAAGTCATGAATGTTCAACTACAGGCTGAACCAGAAACGGATGAAGTTTATGCACAAATAACTCTGCTACCTGAATTGGATCAAGCTGAGGTCACAAGCCCAGATCCTCCCTTTCCAGAACCTCAAAAGTGCAATGTCCATTCATTTTGCAAGACACTTACTGCATCTGACACAAGCCCCCACGGTGGATTCTCTGTACGTCGGAGACATGCAGACGATTGTTTACCTCCATTGGACATGTCTCAACAGCAACCCTGGCAAGAATTGATTGCCACTGATCTTCATGGCAATGAATGGCATTTTCGTCACATATTTCAAGGGAAATCTCGGCGCCATTTACTCACCACTGGGTGGAGTGTCTTTCTTAGTGCAAAGAAGTTGGTTGCTGGTGATGTTTTTGTCTTCCTAAGGCAAGTTATGCAGGCGGGAGAAAATGGGGAGCTACGTGTTGGAGTAAGGAGGCTAATGAGACAACTGAACAATATGCCGTCTTCTGTTATATCCAGTCATAGCATGCATTTTGGTGTTCTTGCCGCTGCATCCCATGCTATTTTGACTGGAACCTACTTTTCAGTTTACTACAAACCAAGTCAAAGTTGGCATCTTTTTATTCTTGCTGCTGCAAAGCATGCTATTATGACTGGATCCCACTTTTCAGTTTACTACAAACCAAGAACATGTCAATCAGAGTTCATTGTAAGTCTTAACAAGTACCTTGAGGCTCGAAACTACAGGCTCTCTGTTGGTATGAAGTTTAAGATGAAATTTGAAGATGGGGACGTCCCCGAAAGAAGTTTCAGTGGAACAATTGTTGAGGAAGGAGATAGTTCCCCATCGAGATGGCCTGATTCTGAGTGGAGATCCTTAAAGATTCAATGGGTTGAACCTTCATCAATATTGCGTCCAGACAGAGTTTCACCGTGGGAGTTAGAGCCTCTTCTGGCATCAACTCCTTCAAATCCACAACCTCCACAAAGAAATAATAAACGGGCTCGACCGCAAGTTTTACCTTCACGCTTGCCAGAGCGTTCTCCTATTGGTGGAATGTGGAAATCCCAAGATGACCACCACCGCACATCATCTCTCTCTTTTTGCTGGCCCCCACATGGAAGCGATGGTCATGGTGCCCATGTGGAGGAGCACGTGGTAGAACCGGTTCATGCGCAGGTGGTCGTGGAGCTGGCACCGGAGAGGCAGGAGCAGGTGCCTCCATCGACAATTTTACAGATCCCATCAGGGCTGGAGATGGATGTGACGACTCCCACCTGCGACGTTGGCAAGGTGAGTCCAGATCAACCTACTTCCAGCTTCTTCCAGGGTGTCATCAGTGGCGGGAGGAGGGCTGATGGGGGTGGTGATGATGTGTCCATGGACAGGCCGTCTGGTGCTAGAATCAGTCAGGGCTGGGAAGCTGATAGCGGGAGCAAGGCCACTCAACATTCCGTGGGAGCTCCGGTCTATTCCATGCATGGTTTTGATCACCTGTTGGAGCAGGTTTCTCCAGGGAATTACTGGGAGGGGATCCTGAGTGTGGAGGAGGCGGTGGAGAGGCGTGAGCAGGTGCCTCTGGCTAGGACAGAGGGAGCTACCACTTCTGTTCCAGTTCAGGCATTTAGATTGGGAGGATCGGGCGTTCCCTTGGTGGTGCCTCCTCTATGGCCTCAGCAGTTCCAGTTCATAGGCCTGGGGGTTGAGACCTTCCAAATTCCCCAGGTTCCAGGTCCCGGGACAGCTGTAACTCTTCCTCAGGAACTCGACGATCACGAGGTGATTCAAATTCGTTCTCAGGACCTAAGGGCTCTCTATGCGAGCTTCTGGTCCCCTTGGGCTTGGATGCTGTTCGGGTTAGGAAGAGATCCTCGACCTTCCGAGAGGGAGTACCGCACTTACTTGTCCCGGGACTTACCTGATCTCTACCTTTCTGGTGGCGGTTCAGCGGGAGCCTCACGGGGGGACCGTTCGGCATCTATTCAGCCTTCTGGCAATTGCTATTGCAAGGGTGCTTCTCATCACCGTCTGGAAGCTACTGTTGCTGGTCGTTCTCGTACGGTAACCCAGTCCGAACCCAACAGAGCTCAAGACACTACTGCAGAGGGTACAGGAGAATGCAGCGCCCATGGGAAGCGCCCTAGGACTGATTAG

Network for GWHGAAZE018989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	126	231	4.00E-19
PF06507.14	Auxin_resp	285	367	4.70E-30

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.059
	SRR3591706	second leaf	1.919
	SRR3591707	mature leaf	2.493
	SRR3591708	Shoot apex	24.111
	SRR3591709	Stem	4.529
	SRR3591710	White floral bud	6.476
	SRR3591711	White flower	7.087
	SRR3591712	Green floral bud	8.665
	SRR3591713	Yellow flower	3.319
SRP173429	SRR8316895	Juvenile bud stage	1.869
	SRR8316896	Juvenile bud stage	2.040
	SRR8316897	Juvenile bud stage	1.383
	SRR8316894	Third green stage	0.857
	SRR8316900	Third green stage	1.206
	SRR8316901	Third green stage	1.680
	SRR8316898	Complete white stage	0.227
	SRR8316899	Complete white stage	0.970
	SRR8316903	Complete white stage	0.290
	SRR8316902	Silver flowering stage	0.495
	SRR8316904	Silver flowering stage	0.465
	SRR8316905	Silver flowering stage	0.212
	SRR8316906	Gold flowering stage	0.569
	SRR8316907	Gold flowering stage	0.497
	SRR8316908	Gold flowering stage	0.851
SRP132670	SRR6706286	Control	1.288
	SRR6706287	Light intensity 50%	1.566
	SRR6706288	Light intensity 20%	2.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.190
	CNS0095593	Slightly white alabastrum(diploid) 2	1.178
	CNS0095594	Slightly white alabastrum(diploid) 3	1.921
	CNS0095595	Whole white alabastrum(diploid) 2	1.086
	CNS0095596	Whole white alabastrum(diploid) 3	0.851
	CNS0095597	Whole white alabastrum(diploid) 4	1.236
	CNS0095598	Silvery flower (diploied) 1	2.614
	CNS0095599	Silvery flower (diploied) 2	1.533
	CNS0095600	Silvery flower (diploied) 3	1.488
	CNS0095601	Golden flower (diploid) 1	2.962
	CNS0095602	Golden flower (diploid) 2	1.904
	CNS0095603	Golden flower (diploid) 3	2.140
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.397
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.201
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.184
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.638
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.215
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.275
	CNS0095610	Silvery flower (tetraploid) 1	3.115
	CNS0095611	Silvery flower (tetraploid) 2	2.094
	CNS0095612	Silvery flower (tetraploid) 3	2.648
	CNS0095613	Golden flower (tetraploid) 1	2.679
	CNS0095614	Golden flower (tetraploid) 2	2.769
	CNS0095615	Golden flower (tetraploid) 3	2.682
CRA001975	CRR073297	Stem 1	3.213
	CRR073298	Stem 2	2.283
	CRR073299	Stem 3	3.498
	CRR073300	Leaf 1	2.461
	CRR073301	Leaf 2	1.884
	CRR073302	Leaf 3	1.183
	CRR073303	Juvenile bud 1	0.670
	CRR073304	Juvenile bud 2	0.402
	CRR073305	Juvenile bud 3	0.689
	CRR073306	Third green 1	0.436
	CRR073307	Third green 2	0.246
	CRR073308	Third green 3	0.193
	CRR073309	Second white 1	0.322
	CRR073310	Second white 2	0.347
	CRR073311	Second white 3	0.562
	CRR073312	Silver flowering 1	0.255
	CRR073313	Silver flowering 2	0.543
	CRR073314	Silver flowering 3	0.124
	CRR073315	Gold flowering 1	0.260
	CRR073316	Gold flowering 2	0.220
	CRR073317	Gold flowering 3	0.475
	CRR073318	Tawny withering 1	0.801
	CRR073319	Tawny withering 2	0.656
	CRR073320	Tawny withering 3	0.976