Gene detail

Detail information of GWHGAAZE018987

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010657917.1	PREDICTED: auxin response factor 1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8L7G0\|ARFA_ARATH	Auxin response factor 1
trEMBL	tr\|D7TGL8\|D7TGL8_VITVI	Auxin response factor {ECO:0000256\|RuleBase:RU004561}
TAIR10	AT1G59750.2	auxin response factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28271966	28280312	-
GWHAAZE00000005	mRNA	28271966	28280312	-
GWHAAZE00000005	exon	28280069	28280312	-
GWHAAZE00000005	exon	28278908	28279374	-
GWHAAZE00000005	exon	28278102	28278214	-
GWHAAZE00000005	exon	28276946	28277041	-
GWHAAZE00000005	exon	28276763	28276819	-
GWHAAZE00000005	exon	28276455	28276607	-
GWHAAZE00000005	exon	28276250	28276334	-
GWHAAZE00000005	exon	28275439	28275544	-
GWHAAZE00000005	exon	28275197	28275361	-
GWHAAZE00000005	exon	28274832	28274951	-
GWHAAZE00000005	exon	28274671	28274746	-
GWHAAZE00000005	exon	28273984	28274152	-
GWHAAZE00000005	exon	28273420	28273904	-
GWHAAZE00000005	exon	28273072	28273174	-
GWHAAZE00000005	exon	28272302	28272341	-
GWHAAZE00000005	exon	28271966	28272146	-
GWHAAZE00000005	five_prime_UTR	28280069	28280312	-
GWHAAZE00000005	five_prime_UTR	28278954	28279374	-
GWHAAZE00000005	CDS	28278908	28278953	-
GWHAAZE00000005	CDS	28278102	28278214	-
GWHAAZE00000005	CDS	28276946	28277041	-
GWHAAZE00000005	CDS	28276763	28276819	-
GWHAAZE00000005	CDS	28276455	28276607	-
GWHAAZE00000005	CDS	28276250	28276334	-
GWHAAZE00000005	CDS	28275439	28275544	-
GWHAAZE00000005	CDS	28275197	28275361	-
GWHAAZE00000005	CDS	28274832	28274951	-
GWHAAZE00000005	CDS	28274671	28274746	-
GWHAAZE00000005	CDS	28273984	28274152	-
GWHAAZE00000005	CDS	28273420	28273904	-
GWHAAZE00000005	CDS	28273072	28273174	-
GWHAAZE00000005	CDS	28272302	28272341	-
GWHAAZE00000005	CDS	28271966	28272146	-

Transcript Sequence
>GWHTAAZE019009 TTCAACCAGGCAAAGACTATCACCTCTCTCTACAGCCTTCAACATTCATCCCCCTTTCTTACTTTTTTTTCTCCTTTTCGAAACCCTAATTATTGCTGTTATATACTTCATTGATCCATCTCCTCTTTTGAGCTTTGACCGTTTCGAGAACAATTTCGGAGCTTTTATTTTATTGTGATTTGATATGGAAATGGCGGATTTTTCCACAGATTTGATTTCGAGCTGAATCAGTTCGAATCCATAGAAATTTATCCCGAAAGTTTAGCTTAAAGAGAAAGAGGTTTTGGATAATATAATCCAGCGGGTGAAGGGTTCATGCTTTTCGGGTGATCTTTATCTTGAGAGTTGAGACATATATGTTAAAGGCCCCAAGATAACCAGGCTTTTTTGCTCCATTTAAGGCCAGAAAGCAGAGAGTAACCGTCACACATAAGCATTTAGTGGCTTTAATTAGCTCTCTGAAAAAACTATCCATATCATTAATTATCTCCCCAAATATATCTCTGGCGGTTCTGTTAATTACGTATTGATTGCTGATAACTTCTATTAGTACGCTGTCTCCTTCAAAATAACAGTAGCCTTTCATAACGGACTGGGTTTCTTGCTTATTTTGAAGATATTATCATATCGAGTGGTTGCTTTGAGGATTTAAGGGTGGTATTTTCATGGCTCATATTGCTGCAAATCACTTATCTGGAAGTCCTCACCCAGGAGCCTCGGATGCTTTGTACAAGGAACTGTGGCACTCATGTGCTGGACCGCTTGTCACGGTTCCTTGTGAAGGAGAACGGGTTTATTACTTTCCGCAAGGTCACATGGAACAGCTTGAAGCATCGACACATCAGGGATTAGATCAACAACTTCCTTCTTTCAACTTACCAGCCAAAATACTCTGCAAAGTCATGAATGTTCAACTACAGGCTGAACCAGAAACGGATGAAGTTTATGCGCAAATAACTCTGCTACCTGAATCGGATCAAGCTGAGGTAACAAGCCCAGATCCCCCCCTTCCAGAACCTCAAAAGTGCAATGTCCATTCATTTTGCAAGACACTTACTGCATCTGACACAAGCACCCACGGTGGATTCTCTGTACTTCGGAGACATGCAGATGATTGTTTACCTCCATTGGACATGTCTCAACAGCCACCCTGGCAAGAATTGATTGCCACTGATCTTCATGGCAATGAATGGCATTTTCGTCACATATTTCGAGGGCAACCTCGGCGCCATTTACTCACCACTGGGTGGAGTGTCTTTGTTAGTGCAAAAAAGTTGGTTGCTGGTGATGCTTTTATCTTCCTAAGGCAAGTTATGCGGGCGGGAGATAATGGGGAGCTACGTGTTGGAGTAAGGAGGCTTATGAGACAACTGAACAATATGCCATCTTCTGTTATATCCAGTCATAGCATGCATCTTGGTGTTCTTGCCACTGCATCCCATGCTATTTTGACCGGAACCCTCTTTTCAGTTTACTACAAACCAAGAACAAGTCGATCCGTGTTCATTGTAAGTCTTAACAAGTACCTTGAAGCTCGAAGCTGCAAGCTCTCTGTTGGGATGAGGTTTAAGATGAAATTTGAGGGCGAGGAAGTCCCTGAAAGAAGGTTCAGTGGAACTATTGTTGGGGTTGGAGATAATACGTCATCGAGATGGATTGATTCTGAGTGGAGATCCCTAAAGATTCAATGGGATGAACCTTCATCAATATTGCGTCCGGACAGAGTTTCACCATGGGAATTAGAGCCTCTTCTGGCATCAACTTCTTCAAATCCACAACCTCCACAAAGAAATAATAAACGGGCTCGACTGCAAGTTTTACCTTCACCCATGCCAGAGCGTTCTCCTATTGGAATGTGGAAATCCCATATTGACAACCGCACATCAACTTTCTCTTTTGGTGAGCAACTGCGTGGTCGAGACCTTTATTCATCACCCAAATTCTCTTCTGGTACTACCAAGGGAAGCACTCACAGCTACAACGAGAACAATTCATTGCTTCCTGTTTCCAGCAAGCCAATGTATTTGTCAAACCAAGGTGAGACCGTAACAGAGTCTTTTGTACCTGCTGTGAACAAGGAAATTGGTGAAAAGAGACAAAGCAATGGCTACAGGCTATTTGGTATTGAACTAATTGATCGCTCCACCGTGGAAGAAACCTTGCCAATAGTGGTGGAGGATCAACCAGGTGCGTCTTTAGAAGCTGAATCTGATAGGCATTCTGAGCCGTCGAATGTTAACGGACCTGATATTCCTTCAGTTATCTGCGAGATTGAAAAATCATGCCCGGTATCCACTCAAGAGTCGCAAAGCAGGCAAATTCGGAGCTGCACTAAGGTCCACATGCAAGGGATTGCTGTAGGGAGGGCAGTAGATTTGACAAGGTTTAGTGGCTATGAGGATCTGCTAAGGAAATTTGAGGAGATGTTTCAAATAGAAGTCTGGTTATCAAATTCTTGCTTGACAAATGGGTCGCGTAGCGAGTTCTGTAGCATGGTGAGGAAGATATACATATACACAACAGAGGAAGTGAAGAATCTTTCGCCCAAGTTAAAGCTTCAACTAAAGGATGAGATAAGACAGCAAGGTAAGCCAGTTTCTGTTTCAAATGGGGACACTAGCACTGAAGACCGGTCATCAAATGTGGGTTCTGGTTGCTGA

Network for GWHGAAZE018987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02362.22	B3	126	231	2.10E-19
PF06507.14	Auxin_resp	257	339	2.00E-32
PF02309.17	AUX_IAA	550	591	5.10E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	B3-ARF

KEGG pathway

KO	Enzyme	pathway	mapID
K14486	K14486, ARF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0009725	biological_process	response to hormone
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	43.475
	SRR3591706	second leaf	18.932
	SRR3591707	mature leaf	24.092
	SRR3591708	Shoot apex	36.043
	SRR3591709	Stem	52.642
	SRR3591710	White floral bud	26.631
	SRR3591711	White flower	49.077
	SRR3591712	Green floral bud	16.654
	SRR3591713	Yellow flower	37.921
SRP173429	SRR8316895	Juvenile bud stage	16.842
	SRR8316896	Juvenile bud stage	19.978
	SRR8316897	Juvenile bud stage	11.010
	SRR8316894	Third green stage	10.025
	SRR8316900	Third green stage	14.187
	SRR8316901	Third green stage	14.831
	SRR8316898	Complete white stage	6.899
	SRR8316899	Complete white stage	26.559
	SRR8316903	Complete white stage	13.657
	SRR8316902	Silver flowering stage	11.580
	SRR8316904	Silver flowering stage	17.597
	SRR8316905	Silver flowering stage	7.302
	SRR8316906	Gold flowering stage	24.005
	SRR8316907	Gold flowering stage	25.605
	SRR8316908	Gold flowering stage	24.971
SRP132670	SRR6706286	Control	16.766
	SRR6706287	Light intensity 50%	18.941
	SRR6706288	Light intensity 20%	18.935
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.408
	CNS0095593	Slightly white alabastrum(diploid) 2	10.934
	CNS0095594	Slightly white alabastrum(diploid) 3	10.837
	CNS0095595	Whole white alabastrum(diploid) 2	9.063
	CNS0095596	Whole white alabastrum(diploid) 3	3.788
	CNS0095597	Whole white alabastrum(diploid) 4	8.587
	CNS0095598	Silvery flower (diploied) 1	26.234
	CNS0095599	Silvery flower (diploied) 2	18.139
	CNS0095600	Silvery flower (diploied) 3	28.877
	CNS0095601	Golden flower (diploid) 1	18.209
	CNS0095602	Golden flower (diploid) 2	29.204
	CNS0095603	Golden flower (diploid) 3	29.154
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.778
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.450
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.734
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.749
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.684
	CNS0095610	Silvery flower (tetraploid) 1	37.255
	CNS0095611	Silvery flower (tetraploid) 2	31.131
	CNS0095612	Silvery flower (tetraploid) 3	28.094
	CNS0095613	Golden flower (tetraploid) 1	14.020
	CNS0095614	Golden flower (tetraploid) 2	26.474
	CNS0095615	Golden flower (tetraploid) 3	22.945
CRA001975	CRR073297	Stem 1	30.750
	CRR073298	Stem 2	25.445
	CRR073299	Stem 3	21.664
	CRR073300	Leaf 1	20.638
	CRR073301	Leaf 2	20.128
	CRR073302	Leaf 3	15.195
	CRR073303	Juvenile bud 1	16.486
	CRR073304	Juvenile bud 2	9.507
	CRR073305	Juvenile bud 3	23.480
	CRR073306	Third green 1	10.730
	CRR073307	Third green 2	8.842
	CRR073308	Third green 3	11.137
	CRR073309	Second white 1	12.460
	CRR073310	Second white 2	16.109
	CRR073311	Second white 3	16.943
	CRR073312	Silver flowering 1	14.727
	CRR073313	Silver flowering 2	18.693
	CRR073314	Silver flowering 3	18.842
	CRR073315	Gold flowering 1	10.871
	CRR073316	Gold flowering 2	18.232
	CRR073317	Gold flowering 3	10.982
	CRR073318	Tawny withering 1	16.248
	CRR073319	Tawny withering 2	16.884
	CRR073320	Tawny withering 3	20.862