Gene detail

Detail information of GWHGAAZE018984

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI29641.3	8.92011E-65	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q6YVX9\|C3H16_ORYSJ	2E-44	Zinc finger CCCH domain-containing protein 16
trEMBL	tr\|F6HK03\|F6HK03_VITVI	1E-62	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55006.1}
TAIR10	AT1G10320.1	2E-38	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28262714	28265496	+
GWHAAZE00000005	mRNA	28262714	28265496	+
GWHAAZE00000005	exon	28262714	28262788	+
GWHAAZE00000005	exon	28262950	28263170	+
GWHAAZE00000005	exon	28264296	28265496	+
GWHAAZE00000005	CDS	28262714	28262788	+
GWHAAZE00000005	CDS	28262950	28263170	+
GWHAAZE00000005	CDS	28264296	28265496	+

Transcript Sequence
>GWHTAAZE019006 GTAAATTGCGAATTTGTTAGTGTGACCAGATGGAAGGTTGCCATATGTGGAGAGTATATGAAATCACGATTCAAGACATGTTCTCGGGGAACGGCGTGCAACTTTATCCACTGTTTCCGCAATCCGGGTGGAGATTATGAGTGGGCCGATTGGGATAAACCACCCCCGAAATATTGGACAAGAAAGATGGTTGCTTTGTTCGGTTACTCAGATGAATCTATGTATGACAAACAGATGGAACAAGGTTCAGGACAGCTGAGGAACTCCAACAGAATGTTAACAGAAGAGAGAGACAGATACTACTCTAGAAGATCTCGGTCGAGGGAAAGAGATACTCTCAATGGAAGTTCTAGTAGAAGCCACCGTGAGGAACATGATGTTCGAAGGAGCTCACACCGGGAAAGGCACACAAGTGATGCTAGAAAACGACTGAAGACCCCTGAGGAGAAAAAATGGGTAGAGGAAACAAATTCCAAACACAATCAGCATGACAGGAATAGACTTCACGATACTGACTCCGATGGAGATTGGTCGGACCGGATTAGAGAGGAGAATGGACGCCGTGCTCGTACAAGGAAAAGCTCAAGACACCAGGAGGAAACTTCCGATTCCGATGAAGATTTCTTGGATGAGGAAAGAGAAAGAGGGAGGCGACGCAAAGACAGAAAGACAAGTCCGGGAAAACGGAAGTTAGTTTCCGAGTCTCCAAACGGTCATCGGAAAAGGAGCAGCCAAGCCCATGATAGTGACTACACTGGAGATAGGTCTGATGGAGATAGAGACAGACATCATAATCGAAGAAGGGAAGGATCAAGGAATCCAACAAAAGTTTCGGGCTTGTCTGATGATCATGGGGATTCAGGAAAGATTAATCTGTCTGACTCCGAAAATTTTGAGATACAGAGAGTCAAACGACAAAGTCACTCCACCAAATGGGATCGTTCAAGTATAGAGAACATTGAAGCTGAATCTCAAGTCAACTGTATAAACTCCGATAGGTATGATGGTCAAAGAGCTAAGTCGCATGATCTTGAGTCGAGGTATGACCGTGATGAAAACAATGAGAAAACGGCTTATCGAGAATCTGAGGATAAGATTATGGAAAAAGGCAAAAGATCTAAAATAAAGCTTGATCGTGAAGAAGATGACGAGTTTGTTAGTCTGGGTAGGTATAATCAGAGAAGTAAATCGCGTGATTCTGAATATGACTGGAATGAGAAGGATGACTCAAGAGACCGGTGGGAACCTGAAGTAAATTCTCCGAGAAAAAACAGAAATCTAGAAGTGGTAGTGTTAGTGAGTGATAGTAAAGAATTCAAAGGTAAATCCAAGTATCGCGACGGTGAGCATAGATCAAGACACAGTAGGAGGTCAAAGCATGGGAAACATAGGGAAAGCTTGGAGAAGATGGATTCTGCTGAGGAGTTGCATAAATCTGAAGATAATAAGAAGAGATATAAAAGAAGTCATGGTCACAAAAGGGATGTTGAGAATTGA

Network for GWHGAAZE018984

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	11	38	3.80E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	molecular_function	metal ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.141
	SRR3591706	second leaf	7.165
	SRR3591707	mature leaf	13.558
	SRR3591708	Shoot apex	14.645
	SRR3591709	Stem	16.549
	SRR3591710	White floral bud	13.059
	SRR3591711	White flower	18.384
	SRR3591712	Green floral bud	12.506
	SRR3591713	Yellow flower	12.729
SRP173429	SRR8316895	Juvenile bud stage	8.361
	SRR8316896	Juvenile bud stage	11.756
	SRR8316897	Juvenile bud stage	5.982
	SRR8316894	Third green stage	4.159
	SRR8316900	Third green stage	6.633
	SRR8316901	Third green stage	8.233
	SRR8316898	Complete white stage	2.051
	SRR8316899	Complete white stage	9.068
	SRR8316903	Complete white stage	4.597
	SRR8316902	Silver flowering stage	2.881
	SRR8316904	Silver flowering stage	3.715
	SRR8316905	Silver flowering stage	1.888
	SRR8316906	Gold flowering stage	6.602
	SRR8316907	Gold flowering stage	5.733
	SRR8316908	Gold flowering stage	10.338
SRP132670	SRR6706286	Control	6.757
	SRR6706287	Light intensity 50%	5.698
	SRR6706288	Light intensity 20%	5.719
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.243
	CNS0095593	Slightly white alabastrum(diploid) 2	7.744
	CNS0095594	Slightly white alabastrum(diploid) 3	6.181
	CNS0095595	Whole white alabastrum(diploid) 2	4.807
	CNS0095596	Whole white alabastrum(diploid) 3	3.170
	CNS0095597	Whole white alabastrum(diploid) 4	4.717
	CNS0095598	Silvery flower (diploied) 1	8.970
	CNS0095599	Silvery flower (diploied) 2	8.095
	CNS0095600	Silvery flower (diploied) 3	6.513
	CNS0095601	Golden flower (diploid) 1	10.158
	CNS0095602	Golden flower (diploid) 2	5.380
	CNS0095603	Golden flower (diploid) 3	6.804
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.357
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.778
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.651
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.811
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.457
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.300
	CNS0095610	Silvery flower (tetraploid) 1	11.237
	CNS0095611	Silvery flower (tetraploid) 2	8.289
	CNS0095612	Silvery flower (tetraploid) 3	7.062
	CNS0095613	Golden flower (tetraploid) 1	6.152
	CNS0095614	Golden flower (tetraploid) 2	8.308
	CNS0095615	Golden flower (tetraploid) 3	4.987
CRA001975	CRR073297	Stem 1	9.143
	CRR073298	Stem 2	8.569
	CRR073299	Stem 3	3.465
	CRR073300	Leaf 1	7.658
	CRR073301	Leaf 2	6.592
	CRR073302	Leaf 3	2.605
	CRR073303	Juvenile bud 1	2.115
	CRR073304	Juvenile bud 2	0.988
	CRR073305	Juvenile bud 3	1.868
	CRR073306	Third green 1	0.448
	CRR073307	Third green 2	0.510
	CRR073308	Third green 3	0.623
	CRR073309	Second white 1	0.443
	CRR073310	Second white 2	1.389
	CRR073311	Second white 3	1.130
	CRR073312	Silver flowering 1	0.168
	CRR073313	Silver flowering 2	0.532
	CRR073314	Silver flowering 3	0.665
	CRR073315	Gold flowering 1	0.542
	CRR073316	Gold flowering 2	1.082
	CRR073317	Gold flowering 3	0.188
	CRR073318	Tawny withering 1	4.804
	CRR073319	Tawny withering 2	6.198
	CRR073320	Tawny withering 3	2.722