Gene detail

Detail information of GWHGAAZE018981

Functional Annotation

Database	Orthologs	Annotation
Nr	ACX83569.1	DNA methyltransferase [Hieracium piloselloides]
Swissprot	tr\|Q7Y1I7\|DNM1A_ORYSJ	DNA (cytosine-5)-methyltransferase 1A
trEMBL	tr\|D0V1M8\|D0V1M8_HIEPI	Cytosine-specific methyltransferase {ECO:0000256\|RuleBase:RU000417}
TAIR10	AT5G49160.1	methyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28237777	28244601	+
GWHAAZE00000005	mRNA	28237777	28244601	+
GWHAAZE00000005	exon	28237777	28239260	+
GWHAAZE00000005	exon	28239623	28241123	+
GWHAAZE00000005	exon	28241226	28241390	+
GWHAAZE00000005	exon	28241535	28241742	+
GWHAAZE00000005	exon	28241833	28241944	+
GWHAAZE00000005	exon	28242124	28242271	+
GWHAAZE00000005	exon	28242370	28242567	+
GWHAAZE00000005	exon	28242671	28242949	+
GWHAAZE00000005	exon	28243079	28243240	+
GWHAAZE00000005	exon	28243876	28244094	+
GWHAAZE00000005	exon	28244458	28244601	+
GWHAAZE00000005	CDS	28237777	28239260	+
GWHAAZE00000005	CDS	28239623	28241123	+
GWHAAZE00000005	CDS	28241226	28241390	+
GWHAAZE00000005	CDS	28241535	28241742	+
GWHAAZE00000005	CDS	28241833	28241944	+
GWHAAZE00000005	CDS	28242124	28242271	+
GWHAAZE00000005	CDS	28242370	28242567	+
GWHAAZE00000005	CDS	28242671	28242949	+
GWHAAZE00000005	CDS	28243079	28243240	+
GWHAAZE00000005	CDS	28243876	28244094	+
GWHAAZE00000005	CDS	28244458	28244601	+

Transcript Sequence
>GWHTAAZE019003 ATGGAGAAAAGTAGACGTGGCAAACCAAAGAATGCTGATTCTGATGCTAACAAAGCAGAACCTAATAGTGAAATGACTCCCACACCAAAACAAAAGCGAACAAGGTTGGAGAGCACAGGAAATGCCCCTGCTTCTCGAAAAATGCCAAAGCGAGCAGCTGCATGCATTGATTTCAAGCAAAAACCAGTCCGCTTGTCAGATAAGTCTACGATTGTCGAGGCTAGAACAGTCCAAGTAGTGGGAGAAGAATTATCCGCTATAAATTTGACTAGTGGAGACGATAATCCACGTCCGAACAGAAGATTGACAGACTTCACCTTTAATGACGAAAATGGGAATCTAGAGCTTGTTGAAATCCTAGAAGTAAATGATCTATTTATTTCTGGTCTCATCTTATCTTTGGAGGAAAGTAGCGACAAGGAGAAGGAAAAAGGGATCAAGTGCGAAGGATTTGGACGCATAGAATCTTGGGCAATATCTGGTTATGAAGAGGGTTCAACGGTAATATGGGTCTCCACAGAAGCTGCTGATTATGAGTGTCTCAAACCCGCTGCTAGCTACAAAACACTGTACAGTCATTTTTTTGAAAAAGCACATTCTTGTGTTGAAACTTACAAACGGCTATCAAAATCTGCAGGGGGCAACCCGGATATGAGCCTCAATGAGTTACTTGGGGTGCTTGTTCGATCAATGCGTGCAAGAAAGAATTTTCCTAATGGGACAAATATCAGGAACTTAATTATTTCTTGGGGTGAGTTCATATACGACCAGCTCATTGGCCTGGACAACACGTCTTCCAAGAATGATCAACCCTTTAAGGAACTTCCTGCTCTTGTGGCTCTTAGGGATGAGAGTAAGAAAAATGCCTATTCTTTGCCCAGGAAAACAATTCCATCTGGAGGAGGGGTACCCAACAAAAGTTTGAAAATTGGGGATGGGGAGAAAATGATTACATCTGAGGAAGATGAAGATGCGAAGTTGGCAAGGTTGTTGCAGGAAAAGGAAAACTGGCTGTCATTGAAACAAAAGAAGAGACAGGCTCCAGCCTCTTCAATGAATAAATTTTATGTCAAGATCAATGAAGATGAGATTGCAAATGACTATCCACTACCGGCGTACTATAAAACTATGATTCAAGAAACAGATGAGTACATTATCTATGACAGCGAAGTTAATGATCCCAATGAGCTTCCCAGAAACATGCTTCATAATTGGTCTCTTTACAATTCGGAGTCAAGGTTGATTTCATTGGAGCTTCTCCCTATGAAACCATGTGCGGATATCGATGTCACAATATATGGATCGGGGATTATGACGGCTGACGATGGAAGTGGGTTCTGTCTCGATTCTGAATCTGGTGCTTCAGATTCTTCTGGAGCACAGAATGTAGATGGTATTCCGATATATTTGAGTGCAATAAAAGAGTGGGTGATTGAGTTTGGTTCACATATGATTTTTATTTCCATCCGAACAGACATGGGTTGGTATAGATTGGGAAAGCCCTCAAAGCAGTACGCTCCATGGTATGAACCAGTTTTGAAAACAGCAAGGCTTGGAATTAGCATTATTACAATGTTGAAGGATCAGAGACGAGTATCAAGGCTCCCTTTTCAAGAGGTAATTAAGAAAGTCTCTGAATTTGACAAGGATCACCGGTCCTACATTTCTTCCAATCCGGCTGTTGTGGAGAGATATATTGTCGTTCATGGGCAGATTATCTTGCAACAATTTGCGGAGTATCCTGATGATATCATCAAGAAGTGTTCTTTTGTAACTGGTCTTCAAGATAAAATGGAGGAAAGACATCACACCAAGTGGTTAATGAAGAAAAAAGTTACCTTGAATAAGAAAGAAGAAAATTTGAATCCAAGGGCAGCAATGCCAGTTGTAGTCTCAAATAGGAAAGCTATGCCGGCTACAACAACAAGGCTCGTCAATAGAATTTGGGGAGAATATTACTCGAACTACTTGCCAGAAGAGAGTGAAGTGAACAAAGATGAAGAACTCGAGGAGGAAGAACAAGAAGATAATGGAGAGGAAGACGATGCTGAAGAAGCAGAGAAAATCCCGATTATTGAGGAAATTAAGAAGCCACATTCTGCGTCAGATCAGAAAGGAATACGTTCTTCTAATACAGAAATTAAATGGGATGGGGAAGCAATTAGGAAAGATTGTACAGGCAACGTTCTTTATAAACAGGCCATTGTTCGCGGAGATGTGGTGGCTGTAGGTGGGTCAGTGGTTGTGGAAACCTCTGATTCAGAGGAATATCCTATCTATTTTGTAGAATATATGTTTGAAGAGTGTGATGGAAGGAAAATTATTCATGGAAGACTGATGGTGAGAGGATCTCAGACTGTTCTTGGAAACACCGCCAACAAAAGAGAGGTGTTTTTAACGAATGATTGCATGGAATTCGAGCTTGGCAATGTTATACAAACCACGATTGTGGCATTCCGATCAATGCCTTGGGGCCATCAACACCGCAAGGATAATGCCAATATTGACAAGATCGAGAGGGCAAGAGCGGAGGACAGAAAGAACAAGGGCTTGCCTATGGAATATTTCTGTAAGAATTTGTACTGGCCTGAAAGAGGTGCTTTCTTTTGTCTACAAAGAGATTTTATGGGCCTCGGCAATGGGATTTGTCATTCTTGTAAGATAAAGGAATCCAAAAAGGAGAAGGAAGTTTTTGAGGTGAATATGTCCAATTCAAGTTTCACATACCAGGGAAGCAAATACAGTATAAATGACTTTGTCTATTTGGGTCCCCATCATTTTGCATCAGATGAGATGGACACTGAAACTTTTAAGGGTGGGAGAAATGTGGGCCTTAGGGCTTATGTTATTTGTCAAATTCTAGGGATCGAGGCACCTAAGGCCTCAAACCAAGCTGGACCCAAGTCCTCAAAGGTCAATATGAGAAGATTTTTCAGACCTGAGGACATTTCAGCAGAAAAAGCATACTGTTCTCACACTAGAGAGGTTTATTATAGCGAACAAACAGTTAGGGTGCCTATAGAAACTATTGAAGGAAAATGTGAAGTTAGAAGTAAGCAAGATTTTTTGTCGTTGGAGAGCAGTAATGTCTTTGAGCATATATTCTTTTGTGAGTATCTTTATGACCCCGAGAATGGATCTCTCAAGCTGATGCCTGTTGATATTAAACTAAGTCCATCAAAAGAAAAGGTGGTTAATGATGATGCTGCAAATAGAAGGACAAAAGGGAAGTCTAAACAAGGAGAGAATGATTTTGATGGGACTGAAAAACAAGAGGGTGCAGTTTCCAATAACTGCCTCGCTACCCTCGATATTTTTGCTGGTTGTGGTGGCTTATCAGAAGGTTTGCAGAAATCAGGTGCATCAGTTACCAAGTGGGCAATTGAATATGATGAACCTGCTGGGGAAGCATTTAAACTTAATCATCCGGAGGCATTGACTCTCATCCATAATTGCAACGTGATACTAAGGGCTATAATGACATCATGCGGTGACACAGATGACTGTATTTCAACATCCGAGGCTGCTGAGTTGGCTGCAAAGCTTGATAAGAAGAAAATCAATATTTTGCCTCGGCCAGGCCATGTGGATTTTATCAACGGAGGGCCTCCATGCCAGGGGTTTTCAGGGATGAATAGGTTTAATCAAAGTACTTGGAGCAAAGTTCAATGCGAGATGATCTTGTCGTTCTTATCTTTTGCTGACTACTTCAGGCCTAAGTATTTCCTTTTGGAAAACGTAAGGAACTTTGTATCATTCAACAAAGGGCAGACATTCAAGTTAACTCTAGCTTCATTACTTGAAATGGGTTATCAGGTGAGGTTTGGAATATTGGAAGCTGGGGCTTTTGGAGTCTCTCAATCCCGTAAACGTGCATTCATATGGGCAGCCTCTCCTGAAGAGACACTCCCCGAATGGCCAGAGCCGATGCATGTTTTTGCAGGCCCAGAACTTAGGGTTAATTTAGATGGAAAAATGCAATATGCTGCAGTACGAAGTACTGCAACTGGTGCCCCTTTTCGTGCTATAACTGTTAGAGATACAATTGGAGAACTCCCTGGGGTTGGAAATGGAGCTTCTGCTACAAATATTCAGTACAAAAATGAACCAATTTCTTGGTTCCAGAAGCAAATACGAGGGGATATGTCGGTCTTAGTTGATCATATTTCAAAAGAGATGAATGAGTTAAATCTGATTCGATGCCAAAGGATTCCTAAATGTCCAGGTGCTGACTGGCGCAATCTCCAAGATGAGAAGGTTCTGTTGTCAGACGGACAAATGGTTGATTTAATACCGTGGTGCCTACCAAACACAGCGAAAAGGCATAACCAGTGGAAGGGACTGTTTGGGAGGTTGGACTGGGAAGGAAACTTTCCAACTTCTATTACTGACCCTCAACCAATGGGTAAGGTTGGGATGTGCTTTCACCCTGAACAGGATAGGATACTGACTGTCCGTGAATGTGCTCGATCTCAGGGTTTCCCGGATAGCTATAAGTTTGCTGGGAACATACAACATAAGCATAGACAGATCGGGAATGCGGTTCCTCCCCCATTGGCATTTGCCTTGGGGACTAAACTAAAGGAAGCGATCCAAAGCAACTCCTCCTCAACACAGTAG

Network for GWHGAAZE018981

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12047.9	DNMT1-RFD	96	229	1.60E-34
PF12047.9	DNMT1-RFD	396	546	1.10E-36
PF01426.19	BAH	741	869	1.70E-13
PF01426.19	BAH	913	1049	2.50E-22
PF00145.18	DNA_methylase	1102	1144	0.00028
PF00145.18	DNA_methylase	1189	1528	8.00E-43

Protein Sequence

>GWHPAAZE018992
MEKSRRGKPKNADSDANKAEPNSEMTPTPKQKRTRLESTGNAPASRKMPKRAAACIDFKQKPVRLSDKSTIVEARTVQVVGEELSAINLTSGDDNPRPNRRLTDFTFNDENGNLELVEILEVNDLFISGLILSLEESSDKEKEKGIKCEGFGRIESWAISGYEEGSTVIWVSTEAADYECLKPAASYKTLYSHFFEKAHSCVETYKRLSKSAGGNPDMSLNELLGVLVRSMRARKNFPNGTNIRNLIISWGEFIYDQLIGLDNTSSKNDQPFKELPALVALRDESKKNAYSLPRKTIPSGGGVPNKSLKIGDGEKMITSEEDEDAKLARLLQEKENWLSLKQKKRQAPASSMNKFYVKINEDEIANDYPLPAYYKTMIQETDEYIIYDSEVNDPNELPRNMLHNWSLYNSESRLISLELLPMKPCADIDVTIYGSGIMTADDGSGFCLDSESGASDSSGAQNVDGIPIYLSAIKEWVIEFGSHMIFISIRTDMGWYRLGKPSKQYAPWYEPVLKTARLGISIITMLKDQRRVSRLPFQEVIKKVSEFDKDHRSYISSNPAVVERYIVVHGQIILQQFAEYPDDIIKKCSFVTGLQDKMEERHHTKWLMKKKVTLNKKEENLNPRAAMPVVVSNRKAMPATTTRLVNRIWGEYYSNYLPEESEVNKDEELEEEEQEDNGEEDDAEEAEKIPIIEEIKKPHSASDQKGIRSSNTEIKWDGEAIRKDCTGNVLYKQAIVRGDVVAVGGSVVVETSDSEEYPIYFVEYMFEECDGRKIIHGRLMVRGSQTVLGNTANKREVFLTNDCMEFELGNVIQTTIVAFRSMPWGHQHRKDNANIDKIERARAEDRKNKGLPMEYFCKNLYWPERGAFFCLQRDFMGLGNGICHSCKIKESKKEKEVFEVNMSNSSFTYQGSKYSINDFVYLGPHHFASDEMDTETFKGGRNVGLRAYVICQILGIEAPKASNQAGPKSSKVNMRRFFRPEDISAEKAYCSHTREVYYSEQTVRVPIETIEGKCEVRSKQDFLSLESSNVFEHIFFCEYLYDPENGSLKLMPVDIKLSPSKEKVVNDDAANRRTKGKSKQGENDFDGTEKQEGAVSNNCLATLDIFAGCGGLSEGLQKSGASVTKWAIEYDEPAGEAFKLNHPEALTLIHNCNVILRAIMTSCGDTDDCISTSEAAELAAKLDKKKINILPRPGHVDFINGGPPCQGFSGMNRFNQSTWSKVQCEMILSFLSFADYFRPKYFLLENVRNFVSFNKGQTFKLTLASLLEMGYQVRFGILEAGAFGVSQSRKRAFIWAASPEETLPEWPEPMHVFAGPELRVNLDGKMQYAAVRSTATGAPFRAITVRDTIGELPGVGNGASATNIQYKNEPISWFQKQIRGDMSVLVDHISKEMNELNLIRCQRIPKCPGADWRNLQDEKVLLSDGQMVDLIPWCLPNTAKRHNQWKGLFGRLDWEGNFPTSITDPQPMGKVGMCFHPEQDRILTVRECARSQGFPDSYKFAGNIQHKHRQIGNAVPPPLAFALGTKLKEAIQSNSSSTQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00558	DNMT1, dcm	Metabolic pathways	map01100
K00558	DNMT1, dcm	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0090116	biological_process	C-5 methylation of cytosine
GO:0005634	cellular_component	nucleus
GO:0008168	molecular_function	methyltransferase activity
GO:0003886	molecular_function	DNA (cytosine-5-)-methyltransferase activity
GO:0003682	molecular_function	chromatin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.068
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.066
	SRR3591709	Stem	0.480
	SRR3591710	White floral bud	0.581
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.645
	SRR3591713	Yellow flower	0.035
SRP173429	SRR8316895	Juvenile bud stage	0.478
	SRR8316896	Juvenile bud stage	0.599
	SRR8316897	Juvenile bud stage	0.257
	SRR8316894	Third green stage	0.497
	SRR8316900	Third green stage	1.028
	SRR8316901	Third green stage	0.965
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.474
	SRR8316903	Complete white stage	0.061
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.116
	SRR8316905	Silver flowering stage	0.011
	SRR8316906	Gold flowering stage	0.116
	SRR8316907	Gold flowering stage	0.057
	SRR8316908	Gold flowering stage	0.018
SRP132670	SRR6706286	Control	0.631
	SRR6706287	Light intensity 50%	0.757
	SRR6706288	Light intensity 20%	0.926
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.619
	CNS0095593	Slightly white alabastrum(diploid) 2	0.239
	CNS0095594	Slightly white alabastrum(diploid) 3	0.441
	CNS0095595	Whole white alabastrum(diploid) 2	1.137
	CNS0095596	Whole white alabastrum(diploid) 3	1.625
	CNS0095597	Whole white alabastrum(diploid) 4	1.648
	CNS0095598	Silvery flower (diploied) 1	0.256
	CNS0095599	Silvery flower (diploied) 2	0.408
	CNS0095600	Silvery flower (diploied) 3	0.100
	CNS0095601	Golden flower (diploid) 1	0.171
	CNS0095602	Golden flower (diploid) 2	0.170
	CNS0095603	Golden flower (diploid) 3	0.174
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.064
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.706
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.972
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.843
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.133
	CNS0095610	Silvery flower (tetraploid) 1	0.012
	CNS0095611	Silvery flower (tetraploid) 2	0.142
	CNS0095612	Silvery flower (tetraploid) 3	0.061
	CNS0095613	Golden flower (tetraploid) 1	0.013
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.048
CRA001975	CRR073297	Stem 1	0.700
	CRR073298	Stem 2	0.761
	CRR073299	Stem 3	0.503
	CRR073300	Leaf 1	1.252
	CRR073301	Leaf 2	0.866
	CRR073302	Leaf 3	0.724
	CRR073303	Juvenile bud 1	0.766
	CRR073304	Juvenile bud 2	0.390
	CRR073305	Juvenile bud 3	0.364
	CRR073306	Third green 1	0.047
	CRR073307	Third green 2	0.041
	CRR073308	Third green 3	0.091
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.012
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.067
	CRR073313	Silver flowering 2	0.028
	CRR073314	Silver flowering 3	0.033
	CRR073315	Gold flowering 1	0.073
	CRR073316	Gold flowering 2	0.011
	CRR073317	Gold flowering 3	0.037
	CRR073318	Tawny withering 1	0.625
	CRR073319	Tawny withering 2	0.070
	CRR073320	Tawny withering 3	0.416