Gene detail

Detail information of GWHGAAZE018980

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP00856.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LQ55\|DRP2B_ARATH	Dynamin-2B
trEMBL	tr\|A0A068TX89\|A0A068TX89_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP00856.1}
TAIR10	AT1G59610.1	dynamin-like 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28199098	28222851	+
GWHAAZE00000005	mRNA	28199098	28222851	+
GWHAAZE00000005	exon	28199098	28199250	+
GWHAAZE00000005	exon	28204157	28204207	+
GWHAAZE00000005	exon	28204354	28204474	+
GWHAAZE00000005	exon	28204622	28204711	+
GWHAAZE00000005	exon	28206231	28206292	+
GWHAAZE00000005	exon	28206771	28206885	+
GWHAAZE00000005	exon	28206985	28207318	+
GWHAAZE00000005	exon	28207833	28207980	+
GWHAAZE00000005	exon	28209692	28209793	+
GWHAAZE00000005	exon	28209900	28210019	+
GWHAAZE00000005	exon	28211572	28211655	+
GWHAAZE00000005	exon	28211766	28211893	+
GWHAAZE00000005	exon	28213284	28213368	+
GWHAAZE00000005	exon	28213495	28213633	+
GWHAAZE00000005	exon	28214513	28214589	+
GWHAAZE00000005	exon	28218191	28218335	+
GWHAAZE00000005	exon	28218434	28218582	+
GWHAAZE00000005	exon	28220625	28220738	+
GWHAAZE00000005	exon	28220819	28220886	+
GWHAAZE00000005	exon	28221750	28221922	+
GWHAAZE00000005	exon	28222604	28222851	+
GWHAAZE00000005	CDS	28199098	28199250	+
GWHAAZE00000005	CDS	28204157	28204207	+
GWHAAZE00000005	CDS	28204354	28204474	+
GWHAAZE00000005	CDS	28204622	28204711	+
GWHAAZE00000005	CDS	28206231	28206292	+
GWHAAZE00000005	CDS	28206771	28206885	+
GWHAAZE00000005	CDS	28206985	28207318	+
GWHAAZE00000005	CDS	28207833	28207980	+
GWHAAZE00000005	CDS	28209692	28209793	+
GWHAAZE00000005	CDS	28209900	28210019	+
GWHAAZE00000005	CDS	28211572	28211655	+
GWHAAZE00000005	CDS	28211766	28211893	+
GWHAAZE00000005	CDS	28213284	28213368	+
GWHAAZE00000005	CDS	28213495	28213633	+
GWHAAZE00000005	CDS	28214513	28214589	+
GWHAAZE00000005	CDS	28218191	28218335	+
GWHAAZE00000005	CDS	28218434	28218582	+
GWHAAZE00000005	CDS	28220625	28220738	+
GWHAAZE00000005	CDS	28220819	28220886	+
GWHAAZE00000005	CDS	28221750	28221922	+
GWHAAZE00000005	CDS	28222604	28222851	+

Transcript Sequence
>GWHTAAZE019002 AGGACGATGGAAGCGATCGAGGAATTGTATCAGCTTTCCGATTCGATGTTGCAAGCAGCGGCGGTGCTCGCCGACGAAGACGTCGACGAGAATTCCTCATCGTCTTCGAGGCGGCCTTCGACGTTCCTCAACGTTGTTGCGCTTGGCAATACAGGTGCGGGTAAATCAGCTGTGTTGAACAGTCTAATTGGACATCCTGTACTGCCAACTGGTGAAGGTGGTGCTACTCGTGCGCCAATATGCATTGATTTAAAAAAGGATAGCTCTTTAAACAGCAAAACAATTATTTTGCAGATTGATAGTAAATCCCAGCCTGTTTCTGCAAGTGCTCTCCGTCATTCTTTACAGGACAGGCTTAGCAAAATTTCGAGCAGGACTCGTGATGAAATATATTTAAAGCTTCGAACTAGTACAGCTCCTCCTTTGAAGTTGATTGATTTGCCCGGAGTGGATAACAGAAATCTTGAAGATGCATTGAGTGAGTACGCTGAACGCAGTGATGCAATATTGCTAGTTATAATACCTGCTTCCCAGGCACCAGAAATTTCCTCGTCTAAAGCCCTCAGAGTTGCAAAGGAATATGATGGGGAATGTACGAGAACCATTGGTATCATTAGTAAAATAGATCAAGCAGCTTCGGATCCAAAAATCCTCGCAGCTGTGCAGGCTCTTCTGTCAAATCAAGGACCACGAAGTACATCAGATATTCCATTTGTGGCTTTGATTGGCCAATCTGTATCTATAGCTTCTGCCCAGTCCGGATCTGATAACTCCTTAGAAACTGCTTGGCGAGCTGAAAGTGAAAGTCTTAAATCAATATTAACAGGAGCTCCACAAAGTAAGCTTGGAAGATTAGCTTTGGTGGAGACCCTTGCTTACCAGATCCGTAACCGTATGAATGTCAGGCTCCCTAATCTCCTCACTGGGCTTCAGGGTAAGTCCCAAATTGTACAGGATGAATTAGTGAAGCTTGGTGAACAGTTGGTTAGTAGTTCTGAAGGTACAAGAGCTCTGGCTTTGGAACTTTGCCGTGAATTTGAAGATACATTCCTCCAACATATTACAACTGGTGAGGGTAGTGGCTGGAAAGTTGTTGCGAGTTTTGAGGGAAACTTCCCAAACAGGATTAAGCAGCTCCCCTTAGACAAACATTTTGACATAAAAAATGTTAAAAGGATTGTGCTAGAAGCAGATGGTTATCAACCTTATCTTATTTCTCCAGAGAAAGGGTTGAGGTCTTTAATAAAGGGTGTTTTAGACCTAGCAAAAGAACCTTCTCGTCTGTGTGTTGAGGAGGTGCACCGTGTACTACTGGATATTGTTTCGGCATCTGCAAATGCTACACCAGGTCTCGGTAGATATCCTCCTTTTAAGAGAGAGGTTGTGGCAATTGCGAGTGCTGCGTTGGATGGGTTTAAAAATGATGCAAAGAACATGGTAGTCGCCCTTGTGGATATGGAGCGTGCATTTGTTCCACCACAACACTTTATTCGTTTGGTGCAGAGGAGGATGGATAGGCAAAGGCGCGAGGAAGAGGTGAAAAACCGATCTTCTAAAAAGGCAGTTGATGCGGAGCAATCCATATTGAACAGGGCAACTAGTCCTCAAACCGGAGGGCAACAAACTGGCGGGAGCTTGAAATCAATGAAGGATAAACCCGGTCAACAAGATAAAGATGTACCGGAGGGACCGGTTTTGAAGACTGCAGGGCCCGAGGGGGAAATAACAGCAGGGTTCTTATTGAAGAAAAGCACAAAAACTAGTGGATGGAGTAAAAGATGGTTTGTGTTGAATGAGAAAACCGGAAAGGAATGTAGTATTGACGATGGTTCTGATGAAGAAGAACCCCCCTCAAAAAGTTCCAAAGATAAAAAGGAAAAGGGGTCAGATGGGAAAGGAGCCAATCTTGTTTTCAAAATAACAAGCAAAGTTCAATATAAGACCGTCCTGAAAGCCCACAGTTCTGTTGTGTTGAAAGCTGAGAATATGGCAGAGAAGGTTGAGTGGATAAACAAGTTGCGGAATGTAATTGGTATCAAAGGAGGTCCGGTGAAGGGTGAATCTGGTCTTTCCATGAGGCAAAGTCTCTCTGATGGCTCTCTTGATACAATGACAAGAAGACCTGCAGATCCAGAAGAGGAACTTCGATGGATGTCTCAAGAAGTACGAGGCTATGTTGAAGCTGTTCTCAACAGCCTGGCTGCCAATGTCCCAAAAGCAGTTGTCCTTTGCCAAGTTGAGAAAGCTAAAGAAGACATGCTTAATAAATTATACAGCTCTATTAGCGCCCAAAGTACAGCAAGGATTGAAGAGCTGTTGATGGAGGATAAGAACGTAAAGGGAAAGAGAGAGCGTTATCAGAAACAATCCTCTATAATTTCAAAGCTTACTAGGCAACTCGGTGTTCATGATAATCGAGCTGCTGCGGCTTCTAGCATGTCCAACGGTGGTGGAGCAGAAAGTAGTCCAAGAACCGGTGGGCCCTCATCTGGCGATGACTGGAGATCAGCTTTTGACTCTGCTGCCGGTGGTCCCACCGACTCATATGGTGATCTCTCCTCCAGGTATGGATCCAATGGTCACAGTCGCAGATACAGTGACCCCCCTCAAAACGGTGACTCAGGCTCGAACTCAAGCGGCCGCCGCACCACCCCTAACCGACTCCCACCCGCCCCGCCCCAGTCCGGTTCTGGTTATAGGTTTTAG

Network for GWHGAAZE018980

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00350.24	Dynamin_N	45	207	1.70E-28
PF01031.21	Dynamin_M	258	495	3.60E-20
PF00169.30	PH	578	677	1.00E-06
PF02212.19	GED	713	794	2.80E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01528	DNM1_3	Phospholipase D signaling pathway	map04072
		Endocytosis	map04144
		Endocrine and other factor-regulated calcium reabsorption	map04961
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0005525	molecular_function	GTP binding
GO:0003924	molecular_function	GTPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.937
	SRR3591706	second leaf	6.697
	SRR3591707	mature leaf	3.533
	SRR3591708	Shoot apex	8.331
	SRR3591709	Stem	8.456
	SRR3591710	White floral bud	20.335
	SRR3591711	White flower	8.658
	SRR3591712	Green floral bud	25.332
	SRR3591713	Yellow flower	7.873
SRP173429	SRR8316895	Juvenile bud stage	8.848
	SRR8316896	Juvenile bud stage	14.012
	SRR8316897	Juvenile bud stage	6.411
	SRR8316894	Third green stage	6.702
	SRR8316900	Third green stage	20.804
	SRR8316901	Third green stage	17.476
	SRR8316898	Complete white stage	3.899
	SRR8316899	Complete white stage	9.177
	SRR8316903	Complete white stage	6.823
	SRR8316902	Silver flowering stage	3.093
	SRR8316904	Silver flowering stage	5.318
	SRR8316905	Silver flowering stage	2.036
	SRR8316906	Gold flowering stage	6.112
	SRR8316907	Gold flowering stage	5.514
	SRR8316908	Gold flowering stage	4.660
SRP132670	SRR6706286	Control	11.074
	SRR6706287	Light intensity 50%	11.899
	SRR6706288	Light intensity 20%	11.509
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.735
	CNS0095593	Slightly white alabastrum(diploid) 2	9.025
	CNS0095594	Slightly white alabastrum(diploid) 3	10.656
	CNS0095595	Whole white alabastrum(diploid) 2	13.558
	CNS0095596	Whole white alabastrum(diploid) 3	15.698
	CNS0095597	Whole white alabastrum(diploid) 4	15.270
	CNS0095598	Silvery flower (diploied) 1	3.180
	CNS0095599	Silvery flower (diploied) 2	4.721
	CNS0095600	Silvery flower (diploied) 3	8.790
	CNS0095601	Golden flower (diploid) 1	3.668
	CNS0095602	Golden flower (diploid) 2	9.234
	CNS0095603	Golden flower (diploid) 3	9.152
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.076
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.954
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.538
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.946
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.528
	CNS0095610	Silvery flower (tetraploid) 1	10.803
	CNS0095611	Silvery flower (tetraploid) 2	9.468
	CNS0095612	Silvery flower (tetraploid) 3	8.936
	CNS0095613	Golden flower (tetraploid) 1	5.868
	CNS0095614	Golden flower (tetraploid) 2	11.689
	CNS0095615	Golden flower (tetraploid) 3	10.739
CRA001975	CRR073297	Stem 1	16.740
	CRR073298	Stem 2	14.302
	CRR073299	Stem 3	12.891
	CRR073300	Leaf 1	20.099
	CRR073301	Leaf 2	17.907
	CRR073302	Leaf 3	13.001
	CRR073303	Juvenile bud 1	19.489
	CRR073304	Juvenile bud 2	12.799
	CRR073305	Juvenile bud 3	12.795
	CRR073306	Third green 1	7.103
	CRR073307	Third green 2	7.916
	CRR073308	Third green 3	8.257
	CRR073309	Second white 1	4.598
	CRR073310	Second white 2	5.534
	CRR073311	Second white 3	5.530
	CRR073312	Silver flowering 1	13.102
	CRR073313	Silver flowering 2	17.916
	CRR073314	Silver flowering 3	11.930
	CRR073315	Gold flowering 1	7.314
	CRR073316	Gold flowering 2	8.703
	CRR073317	Gold flowering 3	7.010
	CRR073318	Tawny withering 1	14.401
	CRR073319	Tawny withering 2	7.072
	CRR073320	Tawny withering 3	13.873