Gene detail

Detail information of GWHGAAZE018974

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657930.1	5.6068E-135	PREDICTED: disease resistance protein At4g27190-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9FE67\|ERF80_ARATH	1E-31	Ethylene-responsive transcription factor 9
trEMBL	tr\|A5AFL8\|A5AFL8_VITVI	3E-134	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71233.1}
TAIR10	AT5G44210.1	2E-22	erf domain protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28089671	28091818	+
GWHAAZE00000005	mRNA	28089671	28091818	+
GWHAAZE00000005	exon	28089671	28091818	+
GWHAAZE00000005	CDS	28089671	28091818	+

Transcript Sequence
>GWHTAAZE018996 ATGGAAGAGCATTCGAAACAGGGAGAAAGAAAACAGGATGAGTCGTGGTTTGGCGTGGAAATGACCCACTTGGAGAATAGTAGACTCTCTGAGCTTCCGGGAAACCCTTCCTGCCGTTCTTTAGAAAAAATGCTCTTACAACATAACTCTGATTTGGCAGCGATTCCCTTCTCATTCTTTTTGAATACGCCTGCTCTTCAAGTTCTTGACTTATCCGGTACAAGCATTAAATCTTTGCCCCCATCCATTTCTAGTTTGGTTACACTGCGGGAATTGTTTGTTAGAGATTGTGAACTTCTTATGGCATTGCCCCCTGAAATTGGAGCACTTAGTAATCTCGAGGGTCTTGATCTTGAAGGTACCAAGCTTATATGTCTACCCAAAGAAATTAGAAGTCTTTTAAAGTTGGTACGCTTGAAGGTGTCCTTGTACAAATGTTCTGATAAATACAGAGAAAGTAGAGGAATTGAGGCAATAATCCCGAGGGTAACATTATCAAAATTCAATCACTTGAGGGAATTGAGTATCAATGTCGATCCCAACTGGAGGTGGTGGGATGTAGAGGTGGAAGCTATCCTTGACGAGTTGTCTAGTCTAAGAAACTTGCAGACACTGAAACTGTACTTGCCCAAGGTTGATTTATTGCAACGGTTCCTTCAAGTTACACGCGGTTCGACTTTGTTGTTCCCAACTCTATCAAACTTTAGACTGATTGTTGGCCGTCATGAACAGCGTATCGTATCTTGCCTTCCGGTTGACTTTCAAGTTGAGTTTGAGAAATTGGAGAAATGCCTGAAATATGTAAATGGCGAGGGAAGCACAGACGAGATCGGACAAGCGCTCAAATACTCCAGCGCTTTGTTCCTCGAGCGCCACTGGAGTATCGAGAAGCTCTCTATATTCAAGACTGATGAGATGGACAGGCTTAAGTTTTGCCTGTTAGTGGAATGCAACGAGATGAGCACCGTTGTGGATGGAGCCGACTTATGCCAACAAGGAGACAAAAGAATTAACAATGCCAATGGAAAACCCTTGCTCAGTTCGCTACAATACTTGGGCATTCATTACATGAAGAATTTGGAGCACATTTGGAAAGGGCCAATCGTTAACGGTTGTCTTTCATCCCTACAAATCTTGGACCTGCATTCATGCCCGAATCTGAGTACCATCTTTAGCCTATTTCTGCTTCGTAACCTGCCGAACTTAAAAGAGCTGACACTTGAAGACTGCTCCAAAGTCAAAAGTGTAGTAAGTGTAGACTTTTGCCCCTATGAATCTTTCCTCCCAAGTTTAGAGAAGATATCACTATTGGACTTGCCTGAATTGGTAAGCATTTTCAGTGTTCCGCGCGTCGCGCCAAAACTTGAAAGGATGTTGGTCTATAATTGCCCCAACCTCAAGACTCTTTCGCCCATGGAAACGTCATTTATGAAGGAGATCAAAGGTGAGAGCGAATGGTGGGAAGCGTTGGAGTGGCACAAAAAATCAGAGCTGGGACAAGATGATAATTATTTGCTTGGCATCTTCGTCCCACTTAAAAGTGATGGCGAATTGGTGGATGAATTAGCAGAAGCTGAAAACCAACGTCTCAACGACACTTTATCCTTGTTTCTTCAAGCCTCAACACTTTGCCTGAATTCGGAATGCGCCGCCGCCACCACCACCACCAGTGGATCCAGCCTCGGCCATGGGGTGATATCGGATCCAGCTGATGACACTTGTCAGATCGGCAAAATTAGGGGCTCTTTGGGTTGCAAGTTTTCCGGGGGAGAGAAAAAGGAAATTACTACGACTAATGTGATTGAGAAGGAGATCATGTACAGAGGTGTTCGAAAGCGGCCATGGGGGAGATATGCGGCAGAGATTCGGGACCCGGGAAAGAAGAGTAGGGTTTGGCTCGGGACCTTCGATACAGTGGAGGAAGCAGCCAGGGCTTATGACGCCGCAGCTATTCAACTCAGGGGCTCGAAAGCGAAGCTGAATTTTCCGGGAGTGGGAGTGGGAGTGGGAATTGGAAATAAGAGGAAGAGGGATAAGGAAATGAAAGTGGAAACGAGTTACAAGGAGGAGGAGGAAAAAGGAACTGGGGAAGTGGTGGAGCAAGATGAGATTGAAGAACGGATAATGATGGTGGATCTTAATCTCTGA

Network for GWHGAAZE018974

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	39	99	5.90E-08
PF00847.21	AP2	607	655	1.70E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.482
	SRR3591706	second leaf	0.988
	SRR3591707	mature leaf	0.572
	SRR3591708	Shoot apex	3.054
	SRR3591709	Stem	3.099
	SRR3591710	White floral bud	1.912
	SRR3591711	White flower	3.232
	SRR3591712	Green floral bud	0.964
	SRR3591713	Yellow flower	5.019
SRP173429	SRR8316895	Juvenile bud stage	1.359
	SRR8316896	Juvenile bud stage	2.214
	SRR8316897	Juvenile bud stage	1.642
	SRR8316894	Third green stage	1.231
	SRR8316900	Third green stage	2.467
	SRR8316901	Third green stage	2.283
	SRR8316898	Complete white stage	3.066
	SRR8316899	Complete white stage	5.098
	SRR8316903	Complete white stage	6.159
	SRR8316902	Silver flowering stage	3.152
	SRR8316904	Silver flowering stage	3.083
	SRR8316905	Silver flowering stage	1.834
	SRR8316906	Gold flowering stage	6.250
	SRR8316907	Gold flowering stage	5.218
	SRR8316908	Gold flowering stage	8.275
SRP132670	SRR6706286	Control	4.395
	SRR6706287	Light intensity 50%	3.868
	SRR6706288	Light intensity 20%	3.057
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.137
	CNS0095593	Slightly white alabastrum(diploid) 2	3.784
	CNS0095594	Slightly white alabastrum(diploid) 3	2.786
	CNS0095595	Whole white alabastrum(diploid) 2	2.204
	CNS0095596	Whole white alabastrum(diploid) 3	0.996
	CNS0095597	Whole white alabastrum(diploid) 4	1.826
	CNS0095598	Silvery flower (diploied) 1	8.265
	CNS0095599	Silvery flower (diploied) 2	5.794
	CNS0095600	Silvery flower (diploied) 3	9.577
	CNS0095601	Golden flower (diploid) 1	4.920
	CNS0095602	Golden flower (diploid) 2	10.348
	CNS0095603	Golden flower (diploid) 3	9.508
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.640
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.966
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.895
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.407
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.894
	CNS0095610	Silvery flower (tetraploid) 1	3.678
	CNS0095611	Silvery flower (tetraploid) 2	4.626
	CNS0095612	Silvery flower (tetraploid) 3	6.627
	CNS0095613	Golden flower (tetraploid) 1	3.436
	CNS0095614	Golden flower (tetraploid) 2	5.036
	CNS0095615	Golden flower (tetraploid) 3	4.985
CRA001975	CRR073297	Stem 1	5.895
	CRR073298	Stem 2	5.196
	CRR073299	Stem 3	4.305
	CRR073300	Leaf 1	5.450
	CRR073301	Leaf 2	4.246
	CRR073302	Leaf 3	3.376
	CRR073303	Juvenile bud 1	4.266
	CRR073304	Juvenile bud 2	2.642
	CRR073305	Juvenile bud 3	5.413
	CRR073306	Third green 1	3.571
	CRR073307	Third green 2	2.463
	CRR073308	Third green 3	3.003
	CRR073309	Second white 1	2.489
	CRR073310	Second white 2	2.567
	CRR073311	Second white 3	2.433
	CRR073312	Silver flowering 1	4.285
	CRR073313	Silver flowering 2	5.007
	CRR073314	Silver flowering 3	4.640
	CRR073315	Gold flowering 1	5.292
	CRR073316	Gold flowering 2	8.627
	CRR073317	Gold flowering 3	4.978
	CRR073318	Tawny withering 1	7.329
	CRR073319	Tawny withering 2	5.898
	CRR073320	Tawny withering 3	3.804