Gene detail

Detail information of GWHGAAZE018969

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010574.1	1.1551E-134	Uncharacterized protein TCM_044482 [Theobroma cacao]
Swissprot	tr\|Q9SNB4\|PCL1_ARATH	8E-40	Transcription factor LUX
trEMBL	tr\|A0A061FX49\|A0A061FX49_THECC	4E-135	Uncharacterized protein {ECO:0000313\|EMBL:EOY19384.1}
TAIR10	AT3G10760.1	5E-51	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	28031110	28046088	+
GWHAAZE00000005	mRNA	28031110	28046088	+
GWHAAZE00000005	exon	28031110	28031345	+
GWHAAZE00000005	exon	28035267	28036964	+
GWHAAZE00000005	exon	28039017	28039088	+
GWHAAZE00000005	exon	28043999	28044230	+
GWHAAZE00000005	exon	28044615	28044677	+
GWHAAZE00000005	exon	28045372	28046088	+
GWHAAZE00000005	CDS	28031110	28031345	+
GWHAAZE00000005	CDS	28035267	28036964	+
GWHAAZE00000005	CDS	28039017	28039088	+
GWHAAZE00000005	CDS	28043999	28044230	+
GWHAAZE00000005	CDS	28044615	28044677	+
GWHAAZE00000005	CDS	28045372	28046088	+

Transcript Sequence
>GWHTAAZE018991 ATGGAAGAGCTTGCGAAGATACTGGAATACAGGGGCACGATTTTTGAGGATTCAGTGTTGCCTGTTTACTATGGGGTTGATCCATCGCAAGTTCATGCGAGTATTAGAAAAGCACTTTATAACTATGAGGAGGAGGAATTTGGGATCGAAAAATTGAGGAAAGCCATAACGTGGAGGGAAGCCCTGAGAGAAACTATGGAGTTGGACTCCCGGGTCTTACTGAACCCATCTGATATTTCTGAGTCAAGCTTCATTCGAGAAATTATCAGAGAGATTCAACATAATATGGAAGATCACCCCAGACCAGAAGAAAGAAAACAGGATGAGATGTGGTTTTGCAAGGAGGTCAACTTGGTGGATAGTACACTCTCGGAGCTTCCGGAAAAACCCTACTGCCCTTCTTTGGAAAAATTGTTCTTACAACAAAACTCAGATTTGGCAGCAATTCCTTTCTCATTCTTTAAGAATATGCCTGCTCTCCAAGTTCTAGATTTATCCAATACAAGCATTAAATTTTTGCCCACATCCATTTCTAGTTTGTTTATGCTCCGGGAATTGTTTATGAGAGATTGCCAACTTCTTATGGAATTACCGCCTGAAATTGGAGCGCTTAGTAATCTCCAGGTACTTGATCTTGAGGGTACCAAGCTGATCTATCTACCCAAAGAAATTAGAATGCTCTCAAACTTGGTATGCATGAAGGTGTCCTTGTACAGATCCTCCGATAAGTACAGACAAAGTCGAGGTATTGAGGCAGTAATCCCGAGGGCAACGTTATCCAAACTCTATTACCTCAAGGAATTGAGTATTGATGTGGATCCGGATTGTGGGTGGTGGGACATAAAGGTGGAAGTTATCATTGAAGAGTTATGTAGGTTAAGAAAGTTGCAGACATTAAAACTGTACTTGCCAAAGCTTGAGTTGCTGCAACAATTGCTTCAAGTTACACGCGGCAGGGCAGTTAAAGGGAGCCTATCGTTGCCTTTGGTATTCCCAACGTTATCAAACTTTAGACTGATTGTTGGTCCTCATGAACAGCGTATCGTATCTTGCCTTCCGATGGACCTTCAAGTTGAGTTCGAGAAACTGGAGAAGTGCCTGAAATATGTAAACGGCGAGGGAAGCACAGATGGGATCGGGCAAGTGCTCAAATGCACCAGCGCTTTGTTCCTCGAGCGACACTGGAGTATCAAGAAGCTCTCTGTATTCAAGATTGATGAGATGGACAAGCTTAAGTTTTGCCTGTTGGTGGAATGCAACGAGATGAACGCCGTTGTGGAGGGAGCCGACTTCTATGATCAACAAGGAGATAAAAGAACTAATAGAGCCGATGGAAAACCCGCGCTCAGGTCGCTACAATACTTGGGCATTCATTACATGAAGAACTTGGAGTGCGTGTGGAGAGGGCCAGTTGTTAGTGGTTGTCTTTCTTCCCTACGAGTTTTGGACCTGCATACATGCCCCAATCTGAGTACCATCTTTAGCCCATTGCTGCTTTGTAATCTGACAAACTTAAAAGAGCTTACACTTGAAGACTGTCCCAAAGTTAAAAGTGTAATTTGTGTAGACTCTTGCAGCTATGAATTTTTACTCCCCAGTTTGGAGAAGATATCACTATTGAACTTGCCTGAATTGGTAAGCATTTTTAGTGGTGCACGCATCGCGCCAAAACTAGAAAGGATGTTGGTTTATAATTGCCCGAAGCTCAAGAGTCTTTCTCCCATGGAAACATCATCTATGAAGGAGATCAAAGGCGAGAGAGAATGGTGGGAAGGATTGGAGTGGCACAAATCGGAGCAGCCCAGCAAGCAAGATATTTATTTGCTTGGTATCTTTGTACCGCTTAAAAGTGATGGTGATTTGGTGGAGGAATTAGTAGAAGCTGAAAATCTACGGCTCAATACCTTACGGATGTTTCAGACCTATACTGAAAGCTCCTCTTTCTCTCTTCCATCCATACTCGCAGATCCTCTCTTGCACAGACGCAGGAGCACCAGATGCCGGAGTTCTGAGTCAAGCGTCATTCAAGAAGTTACTAATGAGATTCAACTTAATAAACGTCTGAAATATTTTATGGAAGAGAGCACCAGACCGGAAGAAAGAAAACAGGATGAGTTGTCATTTTGCAAGGAGATCAACTTGGATCCTCTTCTCTCTTCTACGCAGCTCCTCTCTCTCTCTTCCGCCCATACCTCCAGATCCTCTCTCACACAGACGTTGGAACACCAGATGTCGGAGGGTGCCTTTGGGAGACCTGGATTTGATTTCGACGTTGAAATCGGATCCCTTGAAATTGTTTGGCAAAAAATAGGGATGGGGCAGGGGATTTCTCTGCCCCCCGGTCAGTCATCGCAACTTAGCTCGGTGGAATCTAATTCCGGGGAGTTCTGCACTGGGGATGAGCAGGCGAGGACGCTGAAGAGGCTGAGGCCGGTGTGGACCCCGCAGCTGCACAAGCGGTTTGTGGATGCTGTGGCTCACCTTGGGATCAAGAATGCTGTGCCCAAGACCATAATGCAGCTCATGAATGTTGATGGGTTGACCCGTGAGAATGTTGCCAGTCATTTACAGAAGTACAGGCTTTACCTGAAGCGTATGCAGGGGATTTCGAGTGGTGGCGGTGGAGTCCCCAGAGGAATACTATCCAGCGGTGATGCAGCCACTGATCACTTGTTTGCCAGTTCTCCGGTGCCAGCACACTTCCTCCAACCTGTTCGCCACAATTCAGACCACTTCTTGCCGTTTATGCCAGTGCCGGCACTACAGCACCACCACCACCAGCAGATGTCGGCTGCTGCTGCAGCCAGGGCCGGACATCTGCAACTACAGCCACAGTATCGTCAGATGGGCCATTTTGGGTCGCCACCCAATGGGCAATTCGAGCATCCGTTCCTAGCAAGACAGCATTTGGGTATGCCTGTGAATAACACAGTTCCGACTTATGTGGAGGATTTGGAATCACCTAAAGAAGCCACTGGGAGGAAAGTTCTCACTCTATTTCCAACTGGGGATGATTAG

Network for GWHGAAZE018969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	133	193	1.20E-10
PF00249.32	Myb_DNA-binding	811	860	3.20E-08

Protein Sequence

>GWHPAAZE018980
MEELAKILEYRGTIFEDSVLPVYYGVDPSQVHASIRKALYNYEEEEFGIEKLRKAITWREALRETMELDSRVLLNPSDISESSFIREIIREIQHNMEDHPRPEERKQDEMWFCKEVNLVDSTLSELPEKPYCPSLEKLFLQQNSDLAAIPFSFFKNMPALQVLDLSNTSIKFLPTSISSLFMLRELFMRDCQLLMELPPEIGALSNLQVLDLEGTKLIYLPKEIRMLSNLVCMKVSLYRSSDKYRQSRGIEAVIPRATLSKLYYLKELSIDVDPDCGWWDIKVEVIIEELCRLRKLQTLKLYLPKLELLQQLLQVTRGRAVKGSLSLPLVFPTLSNFRLIVGPHEQRIVSCLPMDLQVEFEKLEKCLKYVNGEGSTDGIGQVLKCTSALFLERHWSIKKLSVFKIDEMDKLKFCLLVECNEMNAVVEGADFYDQQGDKRTNRADGKPALRSLQYLGIHYMKNLECVWRGPVVSGCLSSLRVLDLHTCPNLSTIFSPLLLCNLTNLKELTLEDCPKVKSVICVDSCSYEFLLPSLEKISLLNLPELVSIFSGARIAPKLERMLVYNCPKLKSLSPMETSSMKEIKGEREWWEGLEWHKSEQPSKQDIYLLGIFVPLKSDGDLVEELVEAENLRLNTLRMFQTYTESSSFSLPSILADPLLHRRRSTRCRSSESSVIQEVTNEIQLNKRLKYFMEESTRPEERKQDELSFCKEINLDPLLSSTQLLSLSSAHTSRSSLTQTLEHQMSEGAFGRPGFDFDVEIGSLEIVWQKIGMGQGISLPPGQSSQLSSVESNSGEFCTGDEQARTLKRLRPVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMNVDGLTRENVASHLQKYRLYLKRMQGISSGGGGVPRGILSSGDAATDHLFASSPVPAHFLQPVRHNSDHFLPFMPVPALQHHHHQQMSAAAAARAGHLQLQPQYRQMGHFGSPPNGQFEHPFLARQHLGMPVNNTVPTYVEDLESPKEATGRKVLTLFPTGDD

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.433
	SRR3591706	second leaf	0.052
	SRR3591707	mature leaf	0.042
	SRR3591708	Shoot apex	0.344
	SRR3591709	Stem	0.383
	SRR3591710	White floral bud	0.520
	SRR3591711	White flower	0.208
	SRR3591712	Green floral bud	0.906
	SRR3591713	Yellow flower	0.213
SRP173429	SRR8316895	Juvenile bud stage	0.039
	SRR8316896	Juvenile bud stage	0.014
	SRR8316897	Juvenile bud stage	3.521
	SRR8316894	Third green stage	0.123
	SRR8316900	Third green stage	0.084
	SRR8316901	Third green stage	0.046
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.106
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.018
	SRR8316904	Silver flowering stage	0.088
	SRR8316905	Silver flowering stage	0.006
	SRR8316906	Gold flowering stage	0.118
	SRR8316907	Gold flowering stage	0.115
	SRR8316908	Gold flowering stage	1.135
SRP132670	SRR6706286	Control	0.013
	SRR6706287	Light intensity 50%	0.026
	SRR6706288	Light intensity 20%	0.052
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.186
	CNS0095593	Slightly white alabastrum(diploid) 2	0.257
	CNS0095594	Slightly white alabastrum(diploid) 3	0.029
	CNS0095595	Whole white alabastrum(diploid) 2	0.141
	CNS0095596	Whole white alabastrum(diploid) 3	0.097
	CNS0095597	Whole white alabastrum(diploid) 4	0.146
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.144
	CNS0095600	Silvery flower (diploied) 3	0.079
	CNS0095601	Golden flower (diploid) 1	0.046
	CNS0095602	Golden flower (diploid) 2	0.046
	CNS0095603	Golden flower (diploid) 3	0.074
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.294
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.213
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.097
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.100
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.166
	CNS0095610	Silvery flower (tetraploid) 1	0.095
	CNS0095611	Silvery flower (tetraploid) 2	0.113
	CNS0095612	Silvery flower (tetraploid) 3	0.338
	CNS0095613	Golden flower (tetraploid) 1	0.207
	CNS0095614	Golden flower (tetraploid) 2	0.262
	CNS0095615	Golden flower (tetraploid) 3	0.055
CRA001975	CRR073297	Stem 1	0.382
	CRR073298	Stem 2	0.265
	CRR073299	Stem 3	0.295
	CRR073300	Leaf 1	0.214
	CRR073301	Leaf 2	0.165
	CRR073302	Leaf 3	0.073
	CRR073303	Juvenile bud 1	0.169
	CRR073304	Juvenile bud 2	0.049
	CRR073305	Juvenile bud 3	0.053
	CRR073306	Third green 1	0.041
	CRR073307	Third green 2	0.438
	CRR073308	Third green 3	0.385
	CRR073309	Second white 1	0.199
	CRR073310	Second white 2	1.201
	CRR073311	Second white 3	3.369
	CRR073312	Silver flowering 1	7.749
	CRR073313	Silver flowering 2	9.071
	CRR073314	Silver flowering 3	7.726
	CRR073315	Gold flowering 1	0.030
	CRR073316	Gold flowering 2	0.005
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.346
	CRR073319	Tawny withering 2	0.103
	CRR073320	Tawny withering 3	0.052