Gene detail

Detail information of GWHGAAZE018966

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010036386.1	3.33212E-90	PREDICTED: transcription factor PCL1-like [Eucalyptus grandis]
Swissprot	tr\|Q9SNB4\|PCL1_ARATH	8E-37	Transcription factor LUX
trEMBL	tr\|A0A059A3P3\|A0A059A3P3_EUCGR	1E-90	Uncharacterized protein {ECO:0000313\|EMBL:KCW47935.1}
TAIR10	AT3G10760.1	1E-51	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	27908271	27917794	+
GWHAAZE00000005	mRNA	27908271	27917794	+
GWHAAZE00000005	exon	27908271	27909334	+
GWHAAZE00000005	exon	27909637	27909924	+
GWHAAZE00000005	exon	27910134	27910265	+
GWHAAZE00000005	exon	27915505	27915736	+
GWHAAZE00000005	exon	27917069	27917794	+
GWHAAZE00000005	CDS	27908271	27909334	+
GWHAAZE00000005	CDS	27909637	27909924	+
GWHAAZE00000005	CDS	27910134	27910265	+
GWHAAZE00000005	CDS	27915505	27915736	+
GWHAAZE00000005	CDS	27917069	27917794	+

Transcript Sequence
>GWHTAAZE018988 ATGGAAGATAGCCCCAGACCAGAAGAAAGAAAACAGGATGAGACGTGGCTTTGCGAGGAGATCGACTTGGTGGATAGTAGACTCTCTGACCTGCCGGAAATCCCTTACTGCACTTCTTTGGAAAAGTTGTTCTTACAACAAAACTCAGATTTGGCTGCAATTCCTTTCTCATTCTTTAAGAATATGCCTGCTCTCCAAGTTCTAGATTTATCTGATACAAGCATTAAATTTTTGCCCACATCCATTTCTAGTTTGTTTATGCTCCGGGAATTGTTTGTGAGAGATTGCCAACTTCTTATGGAATTACCACCTGAAATTGGAGCGCTTAGTAATCTCCAGGTACTTGATCTTGAGGGTACCAAGCTGATCTATCTACCCAAAGAAATTAGACTGCTGTCAAACTTGGTATGCTTGAAGGTGTCCTTGTACAGATGTTCCGATAAGTACAGAGAAAGTCGAGGTATTGAGGCAGTAATCCCGAGGGCGATGTTATCCAAATTCTATTACCTCAAGGAATTGAGTATTGATGTGGATCCGTATTGTGGATGGTGGGACATAAAGGTGGAAGTTATCATAGAAGAGTTATGTAGGTTAAGAAAGTTGCAGACATTGAAACTGTACTTGCCAAAGCTTGAGTTGCTGCAACAATTGCTTCAAGTTACACGCGGCAGGGCAGTTAAAGGGAGCCTATTCTTGCCTTTGATATTCCCAACATTATCAAACTTTAGACTGATTGTTGGTCCTCATGAACATCGTATCATATGTTGCCTTCCGGTGGACCTTCAAGTTGAGTTCGAGAAACTGGAGAAGTGCCTGAAATATGTAAACGGTGAGGGAAGCACAGATGGGATCGGCAAAGTGCTCAAATGCACCAGTGCTTTGTTCCTCGAGCGACACTGGAGTATCAAGAAGCTCTCTGTATTCAAGATTGATGAGATGGACAAGCTTAAGTTTTGTCTGTTGGTGGAATGCAACGAGATGAATGCCGTTGTGGAAGGAGCCGACTTCTATGATCAACAAGGAGACAAAAGAACTAATAGTGCCGATGGAAAACCCGCGCTCAGTGGTGCACGCATCGCGCCAAGACTAGAAAGGATGTTGGTTTATAATTGCCCGAAGCTCAAGACTCTTTCTCCCATGGAAACATCATCTATGAAGGAGATCAAAGGCGAGAGAGAATGGTGGGAAGGACTGGAGTGGCACAAATCGGAGCAGCGCAGCGAGCAAAATGATAATTATTTGCTTGGCATCTTTGTCCCGCTTAAAAGTGATGGTGATTTGGTGGAGGAATTAGTAGAAGCTGAAAACCTACGGCTCAATACTTTACGGATGTTTCAGACCTGTACTAAAAGCGAGCAAGATGATAATTATTTGCTTGGTATCTTCGTACCGCTTAAAAGTGATGGTGATTTGGTGGAGGAATTAGAAGAAGCTGAAAACCTACGGCTCAATACTTTACGGATGTTTCAGACCTATAATGAAAGTTCTGAGTCAAGCGTCATTCAAAAAGTTACCAATGAGATTCAACTTAATAAACGTCTGAAGTATTTTATGGAAGAGAGCACCAGACCAAAAGAAAGAAAACAGGATGAGTTGTGGTTTTGCAAGGAGATCAACTTGGATCCTCTTCTCTCGTCTACGCAGAGCCTTTCTCTCTCTTCCATCCATACCCGCGAATCCTCTCTCGCACAGACGCCAGAGCACCAGATGCCGGAGCAACAAATAGGGACGGGGCAGGGGATTTCTCCGGCCCTCGCTCAGTCATCACAGCTGAGCTCGGTGGAATTCGATTCCGGGGAGTTCGGAGGAGGCAGCACTGGGGATGAGCAGGCGTGGACGCTGAAGAGGCCGAGGCTGTTGTGGACCCCACAGCTGCACAAGAGGTTTGTGGATGCTGTGGCTCACCTTGGGATCAAGAATGCTGTGCCCAAGACCATAGTGCAGCTCATGAGTGTTGATGGGTTGACCCGTGAGCATGTTGCCAGTCATTTATACAAGTACAGGCTTTACCTGACGCGTATGCAGGGGATTTCGAGTGGTGGCGGTGGAGTCCCCAGAGGAGTGCTATCCAGCGGTGATGCAGCCACTGATCACTTGTTCGCCAGTTCTCCGGTGCCAGCACACTTCCTCCAACCTGTTCGCCACAATTCAGACCACTTCTTGCCGTTTATGCCAGTGCCGGCACTACAGCACCACAACCACCAGCCGATGTCGGCTGCCGCTGCAGCCGGGGCCGGACATCTGCAACTACAGCCACAGTATCGTCAGATGGGCCATTTTGGGTCGCCACCCAATGGGCAATTCGAGCATCCGTTCCTAGCAAGACAGCATTTGGGTATGCCTGTGAATAACACAGTTCCAACTTATGTGGAGGATTTGGAATCACCTACAGAAGCCACTGGGAGGAAAGTTCTCACTCTATTTCCAACTGGGGAGGATTAG

Network for GWHGAAZE018966

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	39	98	8.70E-10
PF00249.32	Myb_DNA-binding	621	668	6.00E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.251
	SRR3591706	second leaf	0.672
	SRR3591707	mature leaf	0.348
	SRR3591708	Shoot apex	1.525
	SRR3591709	Stem	2.164
	SRR3591710	White floral bud	0.113
	SRR3591711	White flower	0.098
	SRR3591712	Green floral bud	0.277
	SRR3591713	Yellow flower	0.378
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.036
	SRR8316897	Juvenile bud stage	1.390
	SRR8316894	Third green stage	0.084
	SRR8316900	Third green stage	0.090
	SRR8316901	Third green stage	0.061
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.002
	SRR8316903	Complete white stage	0.025
	SRR8316902	Silver flowering stage	0.021
	SRR8316904	Silver flowering stage	0.029
	SRR8316905	Silver flowering stage	0.028
	SRR8316906	Gold flowering stage	0.184
	SRR8316907	Gold flowering stage	0.039
	SRR8316908	Gold flowering stage	0.519
SRP132670	SRR6706286	Control	0.012
	SRR6706287	Light intensity 50%	0.041
	SRR6706288	Light intensity 20%	0.024
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.102
	CNS0095593	Slightly white alabastrum(diploid) 2	0.082
	CNS0095594	Slightly white alabastrum(diploid) 3	0.113
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.067
	CNS0095597	Whole white alabastrum(diploid) 4	0.007
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.034
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.030
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.292
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.393
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.132
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.361
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.180
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.235
	CNS0095610	Silvery flower (tetraploid) 1	0.141
	CNS0095611	Silvery flower (tetraploid) 2	0.075
	CNS0095612	Silvery flower (tetraploid) 3	1.140
	CNS0095613	Golden flower (tetraploid) 1	0.460
	CNS0095614	Golden flower (tetraploid) 2	0.262
	CNS0095615	Golden flower (tetraploid) 3	0.153
CRA001975	CRR073297	Stem 1	0.047
	CRR073298	Stem 2	0.041
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.007
	CRR073301	Leaf 2	0.036
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.058
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.056
	CRR073309	Second white 1	0.973
	CRR073310	Second white 2	0.469
	CRR073311	Second white 3	1.136
	CRR073312	Silver flowering 1	1.391
	CRR073313	Silver flowering 2	1.735
	CRR073314	Silver flowering 3	1.373
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.305
	CRR073319	Tawny withering 2	0.096
	CRR073320	Tawny withering 3	0.331