Gene detail

Detail information of GWHGAAZE018944

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007010574.1	2.7282E-135	Uncharacterized protein TCM_044482 [Theobroma cacao]
Swissprot	tr\|Q2V9B0\|MY1R1_SOLTU	1E-35	Transcription factor MYB1R1
trEMBL	tr\|A0A061FX49\|A0A061FX49_THECC	1E-135	Uncharacterized protein {ECO:0000313\|EMBL:EOY19384.1}
TAIR10	AT1G70000.2	4E-24	myb-like transcription factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	27534319	27539863	-
GWHAAZE00000005	mRNA	27534319	27539863	-
GWHAAZE00000005	exon	27534319	27534839	-
GWHAAZE00000005	exon	27535184	27535451	-
GWHAAZE00000005	exon	27538211	27539863	-
GWHAAZE00000005	CDS	27538211	27539863	-
GWHAAZE00000005	CDS	27535184	27535451	-
GWHAAZE00000005	CDS	27534319	27534839	-

Transcript Sequence
>GWHTAAZE018966 ATGGAAGTGTTTGAAGATAAGCTGAAGAGCATCGAAAAACATACTGTTCTCACGGAAGTAGAAAGTGAAGCTGAGTTTTCGAATCAAGAGGCATCGAGTTTGACTTCAGAGTGGACAGCTCCAGAAGTCAACTTAGCAAACTGTAGATGCTCAGAGCTACCAGAAAACCCCAACTGCCCTTTCCTGGTAAAATTGTTCTTACAACACAATACTTATTTGACCGAGATTCCGGCCTTGTTCTTCGAGAACATGCCAGTCCTTCAAGTTCTTGATTTGTCAAACACAAGCATAAAAACTTTGCCTTCGTCCATTCTCAAATTATTTAGACTCCGGGAATTGTTTTTAAGAGGCTGTGAAATGTTGATGGAATTGCCACCCGAGATTGGACATCTTGCAAACCTCGAAGTTCTTGACCTTGAAGGAACTGAGCTTGTATCTCTTCCTAAAGAAGTTGGATTGCTACTTCAACTGGAACGCTTGAAGTTCTCCTTGTACAAATTCGCGGACTGCCACAAAGAAATTATTAATGGAATTGAGAGATCAATAATCTCAAGGGAGACTGTATCAAACCTCTCTAGTTTGAAGGAATTAAGCATCAATGTGGATCCAGATTGTGAGTGGTGGGATGCAGAGGTGGAATCTATCATCAGCGATTTGGGCAATTTGGGAAACATGGAAACACTGAAATTGTATTTCCCAACAGTTGAACTATTGGATAAATTCCTACAACGTCGATGTGTTAAGAGACTTGAAAGGGATGTAGTTATGCCTCTGATATATCCGACTTTGTCTAATTTTTACTTCATTGTTGGCCGCCATAATGATCATATCATGTCCAGTATACCGCATGACCTTCATGATGAGTTCATGAAACTAGAGAAATGCCTCAAATATGTAAATGGGAAAGGAGATGTGGATGCTATTATTGCAAACGCACTCGAACATGTCAATGCTTTGTTCCTTGACCGCCACTGGACTATTCAGAGGCTCTCTGTTTTCGATGTGGAAAAGATGGATAAGTTGAAATTTTGCTTGATAGCAGAATGTAATGAGATGGAAACAATTCTTGGTGAACCCACCCTCTCTCTTAGATCTCTACATTACTTAGGTATCCATTACATGAAGAATCTAAGAAGCATTTGGAGAGGACCGATTGTTGTTGGTTCTTTGTCCAGCCTAAAATTCTTGGCTATACATACATGCCCCGAATTGAGAACCGTTTTCAGCCTTAGGTTGCTTGATAATCTAGTTTTCTTGCAAGAGCTTGTCATTGAAGACTGCCCCAAAGTCCGGAGCCTAGTAACTCAGGATTCTTCTCTCTTACAATATAAGGAATTCCTCCCAAGATTGAAAAAGATATCACTTTTACACCTACCCGAATTACACAACATTTCTAGCGGCGTTTGGATTGCCCCTAGATTAGAAAAGATGGTCGTTTATGATTGCCCGAACCTAAAGCATCTCCATCCCTTAGAAAGATGTAGTCGAGATATAAAGGAGATCAAAGGCGAGAGGGAATGGTGGGAGTCGAATAAGTTGGATTGGGGCAGCAAAAAACTCGATTATTTAGATCGAGTGTTTGTCCCACTTGAAGACGATGATTCGAATGATGAACTTGCAGAAGCTGTGCAAGTCTCTCTTAATATGAGCCAGTGTGGTTCTGGCAACAACTCTAGCACCTGCGCATCCAGCACTGGCACCGATGAGCCTTGGGGCTTATGTGCCGGCTGTGGCTCCAATGAGACTGTGTTGTTCGGTGTCCCAGTCAACAAAGAGCCGATGAGGAAGAGCGTGAACATGAACAATCTATCGCATTCCCAACTAACTCATGAATCGGTTAACAACGCCAATGAAGGTGGTTATGCCTCTGCCGACGACGCCATATACCAGCAGCCTGGAGCGAATCAGGAGAGAAGGCTAGGTTTGCCATGGACGGAGGAGGAGCACGAGCTATTCCTCAAAGGATTAAAGAAATATGGTAAAGGAGACTGGAGAGCAATTTCAAGGAATTTAGTGATTACTCGTACGCCTACAGAAGTTGCATTCCACGCTCGGAATTACTTCATTCGCCGGAACAACCATGAGCACGACCATCACCAATCTTGTCCCTCTGACATAACCATCGATACGGTCAGTGCAACACCGGCATTACGGCCATCGAGTGTTATTGACACTCAACAAGTTCTGGTCCAGGAACATCTGCCTCCCCCAGAAATTTCTCACACCGATGGATTTCCTTCGTCACTAGAAGTAGCAAGCCACGCTCAAAATAACTTCATTCGCCAGAACAACCTTCAGCGCCGCCATCACCTATCTTGTCCCTTTGATATAACCATAGATACGGTCGATGCAACACCGACATTATGGCCATCGAGCATTATTGACAGGTGGTCAGTTCTGTTCCAGGAAAATCTGCCTCCTTGGACTAAGCAATCAAGTTAA

Network for GWHGAAZE018944

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	62	118	7.10E-10
PF00249.32	Myb_DNA-binding	643	687	2.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.230
	SRR3591706	second leaf	0.357
	SRR3591707	mature leaf	0.445
	SRR3591708	Shoot apex	0.321
	SRR3591709	Stem	0.639
	SRR3591710	White floral bud	0.134
	SRR3591711	White flower	0.068
	SRR3591712	Green floral bud	0.312
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.027
	SRR8316897	Juvenile bud stage	0.011
	SRR8316894	Third green stage	0.035
	SRR8316900	Third green stage	0.005
	SRR8316901	Third green stage	0.006
	SRR8316898	Complete white stage	0.027
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.024
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.020
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.014
	SRR6706288	Light intensity 20%	0.006
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.009
	CNS0095594	Slightly white alabastrum(diploid) 3	0.068
	CNS0095595	Whole white alabastrum(diploid) 2	0.024
	CNS0095596	Whole white alabastrum(diploid) 3	0.094
	CNS0095597	Whole white alabastrum(diploid) 4	0.016
	CNS0095598	Silvery flower (diploied) 1	0.037
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.078
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.051
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.089
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.101
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.212
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.054
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.036
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.021
	CNS0095610	Silvery flower (tetraploid) 1	0.021
	CNS0095611	Silvery flower (tetraploid) 2	0.063
	CNS0095612	Silvery flower (tetraploid) 3	0.132
	CNS0095613	Golden flower (tetraploid) 1	0.046
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.070
CRA001975	CRR073297	Stem 1	0.030
	CRR073298	Stem 2	0.008
	CRR073299	Stem 3	0.014
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.008
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.084
	CRR073311	Second white 3	0.029
	CRR073312	Silver flowering 1	0.019
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.015
	CRR073318	Tawny withering 1	1.155
	CRR073319	Tawny withering 2	0.774
	CRR073320	Tawny withering 3	1.147