Detail information of GWHGAAZE018927


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007037697.10NB-ARC domain-containing disease resistance protein, putative isoform 1 [Theobroma cacao]
Swissprottr|Q9T048|DRL27_ARATH8E-66Disease resistance protein At4g27190
trEMBLtr|A0A061G5B7|A0A061G5B7_THECC0NB-ARC domain-containing disease resistance protein, putative isoform 1 {ECO:0000313|EMBL:EOY22199.1}
TAIR10AT1G12280.11E-43LRR and NB-ARC domains-containing disease resistance protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2714287727147527+
GWHAAZE00000005mRNA2714287727147527+
GWHAAZE00000005exon2714287727142879+
GWHAAZE00000005exon2714327827143331+
GWHAAZE00000005exon2714456427147527+
GWHAAZE00000005CDS2714287727142879+
GWHAAZE00000005CDS2714327827143331+
GWHAAZE00000005CDS2714456427147527+
Transcript Sequence

Network for GWHGAAZE018927

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0046Protein Kinases CK1_CK1-Pl family Protein Kinases CK1_CK1-Pl
map04626 Plant-pathogen interaction
CFinderModule0282Ubiquitin_ULP family Ubiquitin_ULP family
GO:0008234 cysteine-type peptidase activity GOslim:molecular_function
map04626 Plant-pathogen interaction
GO:0043531 ADP binding GOslim:molecular_function
GO:0006508 proteolysis GOslim:biological_process


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00931.23NB-ARC1914283.00E-38
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13459RPS2 Plant-pathogen interaction map04626

Gene Ontology

GO term OntologyName
GO:0043531molecular_functionADP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.306
SRR3591706second leaf4.113
SRR3591707mature leaf6.357
SRR3591708Shoot apex4.414
SRR3591709Stem7.448
SRR3591710White floral bud4.340
SRR3591711White flower8.520
SRR3591712Green floral bud5.370
SRR3591713Yellow flower8.793
SRP173429 SRR8316895Juvenile bud stage 4.485
SRR8316896Juvenile bud stage 4.580
SRR8316897Juvenile bud stage 4.379
SRR8316894Third green stage 1.383
SRR8316900Third green stage 3.725
SRR8316901Third green stage 4.232
SRR8316898Complete white stage 1.034
SRR8316899Complete white stage 7.916
SRR8316903Complete white stage 2.279
SRR8316902Silver flowering stage1.864
SRR8316904Silver flowering stage3.702
SRR8316905Silver flowering stage1.384
SRR8316906Gold flowering stage 8.563
SRR8316907Gold flowering stage 6.328
SRR8316908Gold flowering stage 12.015
SRP132670SRR6706286Control2.795
SRR6706287Light intensity 50%2.520
SRR6706288Light intensity 20%2.282
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.112
CNS0095593Slightly white alabastrum(diploid) 21.693
CNS0095594Slightly white alabastrum(diploid) 32.575
CNS0095595Whole white alabastrum(diploid) 22.165
CNS0095596Whole white alabastrum(diploid) 31.143
CNS0095597Whole white alabastrum(diploid) 41.757
CNS0095598Silvery flower (diploied) 14.487
CNS0095599Silvery flower (diploied) 23.465
CNS0095600Silvery flower (diploied) 35.581
CNS0095601Golden flower (diploid) 14.341
CNS0095602Golden flower (diploid) 27.635
CNS0095603Golden flower (diploid) 37.368
CNS0095604Slightly white alabastrum(tetraploid) 15.465
CNS0095605Slightly white alabastrum(tetraploid) 23.947
CNS0095606Slightly white alabastrum(tetraploid) 314.229
CNS0095607Whole white alabastrum(tetraploid) 14.700
CNS0095608Whole white alabastrum(tetraploid) 22.995
CNS0095609Whole white alabastrum(tetraploid) 311.428
CNS0095610Silvery flower (tetraploid) 116.242
CNS0095611Silvery flower (tetraploid) 213.385
CNS0095612Silvery flower (tetraploid) 312.743
CNS0095613Golden flower (tetraploid) 17.785
CNS0095614Golden flower (tetraploid) 218.423
CNS0095615Golden flower (tetraploid) 314.397
CRA001975CRR073297Stem 12.222
CRR073298Stem 22.080
CRR073299Stem 31.525
CRR073300Leaf 13.294
CRR073301Leaf 22.230
CRR073302Leaf 31.844
CRR073303Juvenile bud 11.785
CRR073304Juvenile bud 22.239
CRR073305Juvenile bud 31.710
CRR073306Third green 10.623
CRR073307Third green 20.678
CRR073308Third green 30.843
CRR073309Second white 10.907
CRR073310Second white 21.431
CRR073311Second white 31.046
CRR073312Silver flowering 11.142
CRR073313Silver flowering 21.237
CRR073314Silver flowering 30.755
CRR073315Gold flowering 12.293
CRR073316Gold flowering 25.165
CRR073317Gold flowering 30.704
CRR073318Tawny withering 14.064
CRR073319Tawny withering 26.578
CRR073320Tawny withering 32.449