Gene detail

Detail information of GWHGAAZE018926

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010657925.1	5.3576E-124	PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9SCZ4\|FERON_ARATH	2E-67	Receptor-like protein kinase FERONIA (Precursor)
trEMBL	tr\|F6HK14\|F6HK14_VITVI	2E-124	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55017.1}
TAIR10	AT3G51550.1	2E-64	Malectin/receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	27118726	27126021	-
GWHAAZE00000005	mRNA	27118726	27126021	-
GWHAAZE00000005	exon	27118726	27118761	-
GWHAAZE00000005	exon	27119109	27119297	-
GWHAAZE00000005	exon	27120957	27121065	-
GWHAAZE00000005	exon	27121327	27121625	-
GWHAAZE00000005	exon	27122102	27123719	-
GWHAAZE00000005	exon	27125102	27126021	-
GWHAAZE00000005	CDS	27125102	27126021	-
GWHAAZE00000005	CDS	27122102	27123719	-
GWHAAZE00000005	CDS	27121327	27121625	-
GWHAAZE00000005	CDS	27120957	27121065	-
GWHAAZE00000005	CDS	27119109	27119297	-
GWHAAZE00000005	CDS	27118726	27118761	-

Transcript Sequence
>GWHTAAZE018948 ATGTCCGAACTAAGGGGTACGGAATTGTTAACTGAGATAGAAATGCATTCTAAATTTAGACACAGGCATGTCGTTTCTCTTATTGGTTATTGTGATAACAAAGACGAAATCATCGTTGTTTACGAGTACATGGCAAATGGAAGCCTGGCTGATCATCTTTACAAAGCAAAATTGACATACGGTAGTAATTCTAATATGTCGTGGGCACAACGTGTTAAGATATGTATAGAAGTAGCGCGGGGATTAGATTATCTTCACACCGGCGCATATGAATTCCATAGAGTTGTACATGGCGATGTGAAAAGTTCCAATATTTTATTAGATGAAAATTGGGATGCTAAGATTTATGGTTTTAGGGTGTCCACAATAGTTCCGAAAGAGCAGCCTTTTGTTGATACACATGTTAAAGGAACTTTCGGTTATCTTGATCCGGAGTATGCGTTGAGTGGCATTTTAACTGAGAAATCGGACGTTTATTCTTTTGGGGTAGTGTTGTTAGAAGCCTTGTCTGGAAGGCGGGCAGTTGATCGTACACTACCTGAGGACCAATGGAGTATAGTGCAATGGGGCAAACACTGCATACAAGAAGATACAACACACTGGCTTATAGATCCCAATTTAGAGGGGGAAATTCAAGAGAATTCTTTGATGGCTTTTGTGAAAATTGCGGGTCAGTGCTTGCTTAGTCATTGGAAAGAGCGACCGACAATGAGTGAGGTTGTGGCGTCGCTTGAGTTTGCATTGGCATTGGCATTACATAAGAAGGATTCTTCTGTACTTTATGAGGATGTTTATGATTTTGGTGAGACTTTTGACAACCAAAAGGCAAAGGGCTCTTCTACCATACAATCGGATCCCAACTCGCCTATAGGGCAAAGCAAAGGGATTGAAAAAACCTCCTTTGCAGAAGATACCTCGAGCGACGAGTCAACAGTACGTTTTGTGGATTTCGATAAAGATGGACTAAAGAGAAAAGATATTTCGTTGTGGTGTGGTACAGAGTGCCACTTGATGAATAGTGGACTCTCAAAGCTGCCAGAAAACATAAATCTCCCAGGCCTAAGAGAGTTGTTGTTACAAGACAACTATGACTTGTCAGAGATCCCTCCCTCATTCTTTGAGTTCATGCCTGCCCTCCAAGTACTGGATATGTCGAGGACGAGCATAAAATATTTGCCTCCATCCATTTCCAATTTGGTTGAACTCCAGAAATTGTTGTTGAGAGGTTGCAAACTCTTGATGGAATTACCAGCTGAAATTCGGGCACTTAAGAACCTTGAAGTCTTTGATCTTGCAGGAACTGAGCTTATATATATCCCCAAGGAAATTGAAATGCTAAGTAAATTGAAACAGTTGGAGGTGTCCTTGTGTGCTTGTGCGGATGAATACATATCAGAAATAAAGGAGAATGGTGAAATAATCCCAAGGAAGACATTGTCAAAACTCTCTCATTTGAAGGAATTAAGCATCTTTGTGGATCCTGACTGCGAGTGGTGGTATGCAGAGGTGGAATATATCATTCAAGACTTATTTAGCTTGGAAAGGCTGGAAGCAGTAAAGTTGTATTTTCCTACGATTGAACTATTGCAAAAATTCCTTCAACTTCCAAGGGTTGAAAGCCAAAGTTTATCAAACTTTAGATTACTTGTTGGTCGTCATGATCAGGGTATTGTATCTCGTGTTCCGCGTGATCTTCAGGATAGCTTTGAGACATTAGAGAAATGCCTGAAGTATGTAAATGGCAACGGAAACATAGATGGAATTGGCCAGGCGCTCAAACATGCCGGGGCTTTGTTCCTTGACCGCCATTGGACTATCGACCGATTAACTACATTTAAGGCTAATGAGATGGATAATCTAAGGTTTTGCCTGTTGGTGGAATGTAATGAGATGATAACTGCCATTGACGGTGGTGATAACGGAGATAGAAGTAATGGTGGAAAACCCATACTCGGGTTGCTACAATACCTTAGCATCCATTACATGAAGAATTTGGAAAGCATTTTGGTAGGACCACCTGCTAGTGGTTGCCTGTACCATTTACAGGTCTTGGCTCTCCATACATGCCCCAAGTTGAGTATCATTTTCAACGTTGGGTTGCTAAGTAATCTCGTGAACTTGAAAGAGCTAATAGTTGAAGACTGCCCCAAAGTTGAAAGCCTAGTAAGTGTGGAACCTTCGAGCTTGGAATCTAGTGAAGAGTTTCTCCCAAGCTTAGAGAAGATATCACTTCTACATCTACCTGGATTGGTCAGCATTTCTAGTGGTTTATGTGTTGCTCCAAGATTAGAAAGGATGGTTGTTTATAATTGTCCAAAGCTCCAAAGTCTTTCTCCTGCGGAAATGTCCAGTATAGATATAGAAGAGATAAAAGGTGAGAGTGAATGGTGGGAAGCGTTGGAATGGAAAAGCAACCAACCTGAGTATCTGCGTTGTGTCTTCGTCCCACTTCGAAGAGATGGTTTGATGAATCAACTTGCAGAAGCTCGGAATTCACACAATACTTTGAGCATGATTCAAAACTCTAGTAAAAACCAGCGAAGAACCAAGGGCCAAAAGGCACCAGAGGTGGTGGTAAGCTCAGAACATGAACGACATGGTGGTGTGGGGCCCGGAAGCAGCAAGTCTGAATCCGAAACACCTAAAGGTCCAAATATAATAAAATCAAGACATGAACGAAGGCCTAGCCAAGAACAAGATGACCTGAGGAGAGCAACTGATTCTCCATTACGCCAGGATGCCGTAGGCCAAAAAGCCACCGTCAATTCACCTCCTCTTCTAGCCAGGGGTATAAGAACCATTGATGGATCTAACTGGGCCACACGGCATAGTACGGGGGAAGATCACTTGTCTCTGACCCAAAGGAATAACATGCCAATATGGCACCCTTACGTTGGTGGGGACATAATGTTATGGAGCTTGTGTATCCCTAGAATTATCCTCTGTCTTGATCACGGTGGACTTCCTGTTCCAAAATTTGGAGATTGGGATGAACATGATCCAACATCTGACGACGGTTTCACACAAATATTCGAGTTAGTAAGAGAGGAGAGAAAAAGTGCAGGAAGGGTGCCTATAACTCCAGCTGTGACTTCGCTTCCTCCCCACCGAGGTCGTATAAAGAAAAAATTAAAGGGTGGTTGTTTCTGCTTTCAATGGGGCAGAAAATGA

Network for GWHGAAZE018926

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	7	242	1.40E-32
PF13855.7	LRR_8	352	412	5.10E-11
PF05627.12	AvrRpt-cleavage	987	1020	5.20E-15

Protein Sequence

>GWHPAAZE018937
MSELRGTELLTEIEMHSKFRHRHVVSLIGYCDNKDEIIVVYEYMANGSLADHLYKAKLTYGSNSNMSWAQRVKICIEVARGLDYLHTGAYEFHRVVHGDVKSSNILLDENWDAKIYGFRVSTIVPKEQPFVDTHVKGTFGYLDPEYALSGILTEKSDVYSFGVVLLEALSGRRAVDRTLPEDQWSIVQWGKHCIQEDTTHWLIDPNLEGEIQENSLMAFVKIAGQCLLSHWKERPTMSEVVASLEFALALALHKKDSSVLYEDVYDFGETFDNQKAKGSSTIQSDPNSPIGQSKGIEKTSFAEDTSSDESTVRFVDFDKDGLKRKDISLWCGTECHLMNSGLSKLPENINLPGLRELLLQDNYDLSEIPPSFFEFMPALQVLDMSRTSIKYLPPSISNLVELQKLLLRGCKLLMELPAEIRALKNLEVFDLAGTELIYIPKEIEMLSKLKQLEVSLCACADEYISEIKENGEIIPRKTLSKLSHLKELSIFVDPDCEWWYAEVEYIIQDLFSLERLEAVKLYFPTIELLQKFLQLPRVESQSLSNFRLLVGRHDQGIVSRVPRDLQDSFETLEKCLKYVNGNGNIDGIGQALKHAGALFLDRHWTIDRLTTFKANEMDNLRFCLLVECNEMITAIDGGDNGDRSNGGKPILGLLQYLSIHYMKNLESILVGPPASGCLYHLQVLALHTCPKLSIIFNVGLLSNLVNLKELIVEDCPKVESLVSVEPSSLESSEEFLPSLEKISLLHLPGLVSISSGLCVAPRLERMVVYNCPKLQSLSPAEMSSIDIEEIKGESEWWEALEWKSNQPEYLRCVFVPLRRDGLMNQLAEARNSHNTLSMIQNSSKNQRRTKGQKAPEVVVSSEHERHGGVGPGSSKSESETPKGPNIIKSRHERRPSQEQDDLRRATDSPLRQDAVGQKATVNSPPLLARGIRTIDGSNWATRHSTGEDHLSLTQRNNMPIWHPYVGGDIMLWSLCIPRIILCLDHGGLPVPKFGDWDEHDPTSDDGFTQIFELVREERKSAGRVPITPAVTSLPPHRGRIKKKLKGGCFCFQWGRK

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CrRLK1L-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.556
	SRR3591706	second leaf	1.715
	SRR3591707	mature leaf	1.415
	SRR3591708	Shoot apex	1.671
	SRR3591709	Stem	2.592
	SRR3591710	White floral bud	3.177
	SRR3591711	White flower	4.773
	SRR3591712	Green floral bud	3.207
	SRR3591713	Yellow flower	6.455
SRP173429	SRR8316895	Juvenile bud stage	1.546
	SRR8316896	Juvenile bud stage	2.640
	SRR8316897	Juvenile bud stage	1.346
	SRR8316894	Third green stage	1.324
	SRR8316900	Third green stage	3.449
	SRR8316901	Third green stage	3.052
	SRR8316898	Complete white stage	1.780
	SRR8316899	Complete white stage	3.702
	SRR8316903	Complete white stage	3.064
	SRR8316902	Silver flowering stage	2.809
	SRR8316904	Silver flowering stage	4.359
	SRR8316905	Silver flowering stage	2.273
	SRR8316906	Gold flowering stage	7.477
	SRR8316907	Gold flowering stage	6.965
	SRR8316908	Gold flowering stage	8.502
SRP132670	SRR6706286	Control	1.963
	SRR6706287	Light intensity 50%	2.108
	SRR6706288	Light intensity 20%	2.211
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.065
	CNS0095593	Slightly white alabastrum(diploid) 2	1.568
	CNS0095594	Slightly white alabastrum(diploid) 3	1.371
	CNS0095595	Whole white alabastrum(diploid) 2	1.816
	CNS0095596	Whole white alabastrum(diploid) 3	1.926
	CNS0095597	Whole white alabastrum(diploid) 4	1.913
	CNS0095598	Silvery flower (diploied) 1	3.081
	CNS0095599	Silvery flower (diploied) 2	2.343
	CNS0095600	Silvery flower (diploied) 3	5.612
	CNS0095601	Golden flower (diploid) 1	2.305
	CNS0095602	Golden flower (diploid) 2	6.981
	CNS0095603	Golden flower (diploid) 3	5.529
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.289
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.703
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.410
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.669
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.519
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.225
	CNS0095610	Silvery flower (tetraploid) 1	9.955
	CNS0095611	Silvery flower (tetraploid) 2	7.879
	CNS0095612	Silvery flower (tetraploid) 3	8.416
	CNS0095613	Golden flower (tetraploid) 1	6.481
	CNS0095614	Golden flower (tetraploid) 2	9.733
	CNS0095615	Golden flower (tetraploid) 3	12.937
CRA001975	CRR073297	Stem 1	3.383
	CRR073298	Stem 2	3.009
	CRR073299	Stem 3	2.832
	CRR073300	Leaf 1	3.844
	CRR073301	Leaf 2	3.610
	CRR073302	Leaf 3	2.876
	CRR073303	Juvenile bud 1	3.560
	CRR073304	Juvenile bud 2	2.384
	CRR073305	Juvenile bud 3	3.353
	CRR073306	Third green 1	1.857
	CRR073307	Third green 2	2.157
	CRR073308	Third green 3	2.781
	CRR073309	Second white 1	2.895
	CRR073310	Second white 2	3.237
	CRR073311	Second white 3	3.763
	CRR073312	Silver flowering 1	4.284
	CRR073313	Silver flowering 2	3.855
	CRR073314	Silver flowering 3	3.666
	CRR073315	Gold flowering 1	2.169
	CRR073316	Gold flowering 2	2.932
	CRR073317	Gold flowering 3	1.839
	CRR073318	Tawny withering 1	1.971
	CRR073319	Tawny withering 2	2.557
	CRR073320	Tawny withering 3	1.632