Detail information of GWHGAAZE018924


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO97634.10unnamed protein product [Coffea canephora]
Swissprottr|F4I114|Y1960_ARATH0Probable serine/threonine-protein kinase At1g09600
trEMBLtr|A0A068TNW9|A0A068TNW9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97634.1}
TAIR10AT1G09600.10Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2708383627090752-
GWHAAZE00000005mRNA2708383627090752-
GWHAAZE00000005exon2709035127090752-
GWHAAZE00000005exon2708887227089156-
GWHAAZE00000005exon2708789427088211-
GWHAAZE00000005exon2708713727087364-
GWHAAZE00000005exon2708690027087000-
GWHAAZE00000005exon2708586527085979-
GWHAAZE00000005exon2708481527085207-
GWHAAZE00000005exon2708383627084331-
GWHAAZE00000005CDS2709035127090752-
GWHAAZE00000005CDS2708887227089156-
GWHAAZE00000005CDS2708789427088211-
GWHAAZE00000005CDS2708713727087364-
GWHAAZE00000005CDS2708690027087000-
GWHAAZE00000005CDS2708586527085979-
GWHAAZE00000005CDS2708481527085207-
GWHAAZE00000005CDS2708412227084331-
GWHAAZE00000005three_prime_UTR2708383627084121-
Transcript Sequence

Network for GWHGAAZE018924

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase1294136.80E-69
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_CDK-CRK7-CDK9

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.822
SRR3591706second leaf1.025
SRR3591707mature leaf0.096
SRR3591708Shoot apex2.425
SRR3591709Stem4.039
SRR3591710White floral bud3.896
SRR3591711White flower1.866
SRR3591712Green floral bud7.462
SRR3591713Yellow flower0.639
SRP173429 SRR8316895Juvenile bud stage 7.488
SRR8316896Juvenile bud stage 12.749
SRR8316897Juvenile bud stage 2.758
SRR8316894Third green stage 4.716
SRR8316900Third green stage 7.599
SRR8316901Third green stage 11.830
SRR8316898Complete white stage 0.836
SRR8316899Complete white stage 5.018
SRR8316903Complete white stage 1.985
SRR8316902Silver flowering stage0.657
SRR8316904Silver flowering stage0.787
SRR8316905Silver flowering stage0.248
SRR8316906Gold flowering stage 0.499
SRR8316907Gold flowering stage 0.480
SRR8316908Gold flowering stage 0.688
SRP132670SRR6706286Control9.586
SRR6706287Light intensity 50%8.002
SRR6706288Light intensity 20%8.096
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.702
CNS0095593Slightly white alabastrum(diploid) 25.721
CNS0095594Slightly white alabastrum(diploid) 39.962
CNS0095595Whole white alabastrum(diploid) 22.722
CNS0095596Whole white alabastrum(diploid) 34.241
CNS0095597Whole white alabastrum(diploid) 42.711
CNS0095598Silvery flower (diploied) 11.656
CNS0095599Silvery flower (diploied) 21.100
CNS0095600Silvery flower (diploied) 31.330
CNS0095601Golden flower (diploid) 10.826
CNS0095602Golden flower (diploid) 21.062
CNS0095603Golden flower (diploid) 30.931
CNS0095604Slightly white alabastrum(tetraploid) 16.531
CNS0095605Slightly white alabastrum(tetraploid) 26.256
CNS0095606Slightly white alabastrum(tetraploid) 37.468
CNS0095607Whole white alabastrum(tetraploid) 15.158
CNS0095608Whole white alabastrum(tetraploid) 24.101
CNS0095609Whole white alabastrum(tetraploid) 37.242
CNS0095610Silvery flower (tetraploid) 11.346
CNS0095611Silvery flower (tetraploid) 20.930
CNS0095612Silvery flower (tetraploid) 31.272
CNS0095613Golden flower (tetraploid) 10.148
CNS0095614Golden flower (tetraploid) 20.957
CNS0095615Golden flower (tetraploid) 30.381
CRA001975CRR073297Stem 113.249
CRR073298Stem 214.422
CRR073299Stem 312.995
CRR073300Leaf 18.969
CRR073301Leaf 28.435
CRR073302Leaf 37.091
CRR073303Juvenile bud 16.688
CRR073304Juvenile bud 25.567
CRR073305Juvenile bud 38.061
CRR073306Third green 12.673
CRR073307Third green 22.379
CRR073308Third green 33.509
CRR073309Second white 10.822
CRR073310Second white 21.037
CRR073311Second white 30.246
CRR073312Silver flowering 10.428
CRR073313Silver flowering 20.347
CRR073314Silver flowering 30.053
CRR073315Gold flowering 10.019
CRR073316Gold flowering 20.262
CRR073317Gold flowering 30.179
CRR073318Tawny withering 11.942
CRR073319Tawny withering 20.478
CRR073320Tawny withering 33.640