Detail information of GWHGAAZE018916


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDO41302.11.41615E-93hypothetical protein CISIN_1g0102241mg, partial [Citrus sinensis]
Swissprottr|Q9FVW4|RENT3_ARATH8E-65Regulator of nonsense transcripts UPF3
trEMBLtr|A0A067DEP4|A0A067DEP4_CITSI5E-94Uncharacterized protein {ECO:0000313|EMBL:KDO41303.1} (Fragment)
TAIR10AT1G33980.15E-59Smg-4/UPF3 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2699390727009829-
GWHAAZE00000005mRNA2699390727009829-
GWHAAZE00000005exon2699390726993944-
GWHAAZE00000005exon2699404926994115-
GWHAAZE00000005exon2699524726995374-
GWHAAZE00000005exon2699598526996234-
GWHAAZE00000005exon2699700426997077-
GWHAAZE00000005exon2700273027003635-
GWHAAZE00000005exon2700515827005294-
GWHAAZE00000005exon2700640727006492-
GWHAAZE00000005exon2700677927006889-
GWHAAZE00000005exon2700758227007661-
GWHAAZE00000005exon2700782627007924-
GWHAAZE00000005exon2700801827008113-
GWHAAZE00000005exon2700857427008680-
GWHAAZE00000005exon2700942027009829-
GWHAAZE00000005five_prime_UTR2700956327009829-
GWHAAZE00000005CDS2700942027009562-
GWHAAZE00000005CDS2700857427008680-
GWHAAZE00000005CDS2700801827008113-
GWHAAZE00000005CDS2700782627007924-
GWHAAZE00000005CDS2700758227007661-
GWHAAZE00000005CDS2700677927006889-
GWHAAZE00000005CDS2700640727006492-
GWHAAZE00000005CDS2700515827005294-
GWHAAZE00000005CDS2700273027003635-
GWHAAZE00000005CDS2699700426997077-
GWHAAZE00000005CDS2699598526996234-
GWHAAZE00000005CDS2699524726995374-
GWHAAZE00000005CDS2699404926994115-
GWHAAZE00000005CDS2699390726993944-
Transcript Sequence

Network for GWHGAAZE018916

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03467.16Smg4_UPF371697.00E-43
PF14111.7DUF42833534902.30E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14328UPF3, RENT3 RNA transport map03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.692
SRR3591706second leaf2.133
SRR3591707mature leaf1.659
SRR3591708Shoot apex3.005
SRR3591709Stem2.213
SRR3591710White floral bud0.939
SRR3591711White flower0.847
SRR3591712Green floral bud1.946
SRR3591713Yellow flower0.209
SRP173429 SRR8316895Juvenile bud stage 3.071
SRR8316896Juvenile bud stage 4.149
SRR8316897Juvenile bud stage 1.414
SRR8316894Third green stage 1.902
SRR8316900Third green stage 4.012
SRR8316901Third green stage 3.645
SRR8316898Complete white stage 0.684
SRR8316899Complete white stage 4.669
SRR8316903Complete white stage 1.442
SRR8316902Silver flowering stage0.650
SRR8316904Silver flowering stage1.218
SRR8316905Silver flowering stage0.622
SRR8316906Gold flowering stage 1.001
SRR8316907Gold flowering stage 0.755
SRR8316908Gold flowering stage 0.395
SRP132670SRR6706286Control3.532
SRR6706287Light intensity 50%3.998
SRR6706288Light intensity 20%4.268
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.876
CNS0095593Slightly white alabastrum(diploid) 21.462
CNS0095594Slightly white alabastrum(diploid) 31.738
CNS0095595Whole white alabastrum(diploid) 22.042
CNS0095596Whole white alabastrum(diploid) 31.605
CNS0095597Whole white alabastrum(diploid) 42.436
CNS0095598Silvery flower (diploied) 12.250
CNS0095599Silvery flower (diploied) 22.041
CNS0095600Silvery flower (diploied) 31.861
CNS0095601Golden flower (diploid) 12.384
CNS0095602Golden flower (diploid) 22.973
CNS0095603Golden flower (diploid) 32.170
CNS0095604Slightly white alabastrum(tetraploid) 11.621
CNS0095605Slightly white alabastrum(tetraploid) 21.033
CNS0095606Slightly white alabastrum(tetraploid) 32.375
CNS0095607Whole white alabastrum(tetraploid) 10.834
CNS0095608Whole white alabastrum(tetraploid) 20.649
CNS0095609Whole white alabastrum(tetraploid) 31.745
CNS0095610Silvery flower (tetraploid) 10.825
CNS0095611Silvery flower (tetraploid) 21.310
CNS0095612Silvery flower (tetraploid) 30.603
CNS0095613Golden flower (tetraploid) 10.572
CNS0095614Golden flower (tetraploid) 20.485
CNS0095615Golden flower (tetraploid) 30.243
CRA001975CRR073297Stem 13.166
CRR073298Stem 22.992
CRR073299Stem 31.203
CRR073300Leaf 13.238
CRR073301Leaf 22.720
CRR073302Leaf 30.647
CRR073303Juvenile bud 10.962
CRR073304Juvenile bud 20.299
CRR073305Juvenile bud 30.746
CRR073306Third green 10.069
CRR073307Third green 20.165
CRR073308Third green 30.160
CRR073309Second white 10.053
CRR073310Second white 20.133
CRR073311Second white 30.060
CRR073312Silver flowering 10.159
CRR073313Silver flowering 20.091
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.242
CRR073316Gold flowering 21.258
CRR073317Gold flowering 30.258
CRR073318Tawny withering 10.504
CRR073319Tawny withering 21.593
CRR073320Tawny withering 31.081