Detail information of GWHGAAZE018910


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011028359.10PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
Swissprottr|Q39019|KSG10_ARATH0Shaggy-related protein kinase kappa
trEMBLtr|B9N0F1|B9N0F1_POPTR0Uncharacterized protein {ECO:0000313|EMBL:ERP62845.1}
TAIR10AT1G09840.60shaggy-like protein kinase 41

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2673724226742988-
GWHAAZE00000005mRNA2673724226742988-
GWHAAZE00000005exon2674289326742988-
GWHAAZE00000005exon2674139926741644-
GWHAAZE00000005exon2674089226740984-
GWHAAZE00000005exon2674072126740780-
GWHAAZE00000005exon2674034926740621-
GWHAAZE00000005exon2674003126740105-
GWHAAZE00000005exon2673922726739283-
GWHAAZE00000005exon2673900126739141-
GWHAAZE00000005exon2673884426738894-
GWHAAZE00000005exon2673841526738510-
GWHAAZE00000005exon2673806526738148-
GWHAAZE00000005exon2673774526737847-
GWHAAZE00000005exon2673724226737330-
GWHAAZE00000005five_prime_UTR2674289326742988-
GWHAAZE00000005five_prime_UTR2674154626741644-
GWHAAZE00000005CDS2674139926741545-
GWHAAZE00000005CDS2674089226740984-
GWHAAZE00000005CDS2674072126740780-
GWHAAZE00000005CDS2674034926740621-
GWHAAZE00000005CDS2674003126740105-
GWHAAZE00000005CDS2673922726739283-
GWHAAZE00000005CDS2673900126739141-
GWHAAZE00000005CDS2673884426738894-
GWHAAZE00000005CDS2673841526738510-
GWHAAZE00000005CDS2673806526738148-
GWHAAZE00000005CDS2673774526737847-
GWHAAZE00000005CDS2673724226737330-
Transcript Sequence

Network for GWHGAAZE018910

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0169Protein Kinases CMGC_GSK family Protein Kinases CMGC_GSK


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00069.26Pkinase863686.70E-64
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyCMGC_GSK

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf56.314
SRR3591706second leaf21.750
SRR3591707mature leaf14.462
SRR3591708Shoot apex28.145
SRR3591709Stem119.007
SRR3591710White floral bud22.474
SRR3591711White flower11.408
SRR3591712Green floral bud36.703
SRR3591713Yellow flower3.127
SRP173429 SRR8316895Juvenile bud stage 17.903
SRR8316896Juvenile bud stage 19.596
SRR8316897Juvenile bud stage 9.801
SRR8316894Third green stage 11.418
SRR8316900Third green stage 33.426
SRR8316901Third green stage 24.766
SRR8316898Complete white stage 8.082
SRR8316899Complete white stage 67.338
SRR8316903Complete white stage 14.312
SRR8316902Silver flowering stage1.033
SRR8316904Silver flowering stage1.725
SRR8316905Silver flowering stage0.619
SRR8316906Gold flowering stage 0.346
SRR8316907Gold flowering stage 0.780
SRR8316908Gold flowering stage 0.716
SRP132670SRR6706286Control43.440
SRR6706287Light intensity 50%44.193
SRR6706288Light intensity 20%47.032
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.000
CNS0095593Slightly white alabastrum(diploid) 217.365
CNS0095594Slightly white alabastrum(diploid) 310.012
CNS0095595Whole white alabastrum(diploid) 215.468
CNS0095596Whole white alabastrum(diploid) 315.346
CNS0095597Whole white alabastrum(diploid) 415.319
CNS0095598Silvery flower (diploied) 112.423
CNS0095599Silvery flower (diploied) 29.373
CNS0095600Silvery flower (diploied) 38.175
CNS0095601Golden flower (diploid) 18.325
CNS0095602Golden flower (diploid) 29.448
CNS0095603Golden flower (diploid) 38.746
CNS0095604Slightly white alabastrum(tetraploid) 120.052
CNS0095605Slightly white alabastrum(tetraploid) 213.301
CNS0095606Slightly white alabastrum(tetraploid) 342.161
CNS0095607Whole white alabastrum(tetraploid) 111.422
CNS0095608Whole white alabastrum(tetraploid) 29.645
CNS0095609Whole white alabastrum(tetraploid) 326.011
CNS0095610Silvery flower (tetraploid) 16.560
CNS0095611Silvery flower (tetraploid) 210.944
CNS0095612Silvery flower (tetraploid) 32.314
CNS0095613Golden flower (tetraploid) 10.578
CNS0095614Golden flower (tetraploid) 22.720
CNS0095615Golden flower (tetraploid) 30.522
CRA001975CRR073297Stem 128.873
CRR073298Stem 224.531
CRR073299Stem 323.424
CRR073300Leaf 131.729
CRR073301Leaf 227.191
CRR073302Leaf 323.212
CRR073303Juvenile bud 134.092
CRR073304Juvenile bud 228.846
CRR073305Juvenile bud 338.663
CRR073306Third green 11.648
CRR073307Third green 23.183
CRR073308Third green 32.135
CRR073309Second white 10.115
CRR073310Second white 20.167
CRR073311Second white 30.038
CRR073312Silver flowering 10.013
CRR073313Silver flowering 20.055
CRR073314Silver flowering 30.000
CRR073315Gold flowering 115.901
CRR073316Gold flowering 231.750
CRR073317Gold flowering 313.506
CRR073318Tawny withering 132.269
CRR073319Tawny withering 220.736
CRR073320Tawny withering 345.643