Gene detail

Detail information of GWHGAAZE018903

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006349325.1	PREDICTED: 60S ribosomal protein L3-2-like isoform X1 [Solanum tuberosum]
Swissprot	tr\|P35684\|RL3_ORYSJ	60S ribosomal protein L3
trEMBL	tr\|K4B1S7\|K4B1S7_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g103510.2.1}
TAIR10	AT1G61580.1	R-protein L3 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	26668084	26671626	+
GWHAAZE00000005	mRNA	26668084	26671626	+
GWHAAZE00000005	exon	26668084	26668168	+
GWHAAZE00000005	exon	26669126	26669236	+
GWHAAZE00000005	exon	26669784	26670088	+
GWHAAZE00000005	exon	26670551	26670960	+
GWHAAZE00000005	exon	26671368	26671626	+
GWHAAZE00000005	CDS	26668084	26668168	+
GWHAAZE00000005	CDS	26669126	26669236	+
GWHAAZE00000005	CDS	26669784	26670088	+
GWHAAZE00000005	CDS	26670551	26670960	+
GWHAAZE00000005	CDS	26671368	26671626	+

Transcript Sequence
>GWHTAAZE018925 ATGTCTCATCGCAAGTTTGAGCACCCAAGACATGGTTCTTTGGGATTTCTCCCAAGGAAAAGGGCTGCCAGGCACAGAGGAAAAGTGAAGTCTTTCCCCAAAGATGAACCTTCAAAACCTTGCAGATTAACTGCCTTCCTCGGATACAAAGCTGGGATGACTCATATTGTCAGAGAGGTCGAAAAACCTGGGTCAAAGCTCCACAAGAAGGAGACATGTGAAGCAGTAACAATCATAGAAACACCACCAATGATTGTTGTTGGAGTTGTCGGTTATGTGAAAACACCTCGTGGGCTCCGCAGCCTGAGTACTGTTTGGGCACAACATCTAAGCGAGGATGTGAAGAGGAGATTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACAAAGTATACAGCCAAGTATGAAACTGAAGGAGGAAAGAAGGACATTCAGACCCAACTAGAGAAAATGAAGAAGTACTGCACTGTCATTCGTGTTCTGGCTCATACCCAGATCCGCAAGATGAAAGGGCTTAAGCAGAAGAAAGCCCACCTGATGGAGATTCAGGTGAATGGTGGAGATGTTGCCCAGAAGGTTGATTTTGCATACAAATTTTTTGAAAAGCAGGTTCCTGTTGATGCAGTGTTTCAAAAGGACGAAATGATCGACATCATAGGGGTGACCAAAGGTAAGGGTTATGAGGGTGTTGTGACCCGTTGGGGTGTAACTCGTCTTCCCCGCAAGACCCATCGTGGGCTTCGTAAGGTTGCATGTATTGGTGCTTGGCATCCAGCTAGGGTTTCATTTACAGTTGCTAGGGCTGGCCAAAATGGTTACCATCACCGGACTGAGATGAACAAGAAGATTTACAAGCTGGGGAAGTCTGGCCAGGAGTCTCATTCTGCCATAACTGAGTTTGACAGGACGGAGAAGGATATCACACCGATGGGAGGGTTCCCGCACTATGGTTTAGTGAAGGAAGATTATGTGCTGATAAAGGGTTGTTGTGTGGGACCCAAAAAGCGGGTTGTGACCCTGAGGCAGTCATTGTTGAACCAGACGTCTAGGCTGGCGATGGAGGACATTAAACTCAAGTTCATTGATACATCCTCCAAATTTGGCCATGGCCGCTTCCAAACAACCGAAGAAAAGGCCAAGTTTTATGGTAGACTCAAAGCTTGA

Network for GWHGAAZE018903

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00297.23	Ribosomal_L3	1	370	1.10E-192

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02925	RP-L3e, RPL3	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.811
	SRR3591706	second leaf	20.851
	SRR3591707	mature leaf	4.270
	SRR3591708	Shoot apex	49.080
	SRR3591709	Stem	14.917
	SRR3591710	White floral bud	27.368
	SRR3591711	White flower	44.633
	SRR3591712	Green floral bud	46.903
	SRR3591713	Yellow flower	24.006
SRP173429	SRR8316895	Juvenile bud stage	21.040
	SRR8316896	Juvenile bud stage	15.227
	SRR8316897	Juvenile bud stage	14.595
	SRR8316894	Third green stage	4.778
	SRR8316900	Third green stage	20.497
	SRR8316901	Third green stage	11.215
	SRR8316898	Complete white stage	8.197
	SRR8316899	Complete white stage	12.802
	SRR8316903	Complete white stage	10.652
	SRR8316902	Silver flowering stage	15.460
	SRR8316904	Silver flowering stage	11.793
	SRR8316905	Silver flowering stage	5.438
	SRR8316906	Gold flowering stage	16.734
	SRR8316907	Gold flowering stage	24.666
	SRR8316908	Gold flowering stage	38.163
SRP132670	SRR6706286	Control	17.443
	SRR6706287	Light intensity 50%	17.569
	SRR6706288	Light intensity 20%	16.126
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	30.122
	CNS0095593	Slightly white alabastrum(diploid) 2	18.819
	CNS0095594	Slightly white alabastrum(diploid) 3	18.956
	CNS0095595	Whole white alabastrum(diploid) 2	10.547
	CNS0095596	Whole white alabastrum(diploid) 3	11.178
	CNS0095597	Whole white alabastrum(diploid) 4	7.956
	CNS0095598	Silvery flower (diploied) 1	16.318
	CNS0095599	Silvery flower (diploied) 2	15.479
	CNS0095600	Silvery flower (diploied) 3	15.162
	CNS0095601	Golden flower (diploid) 1	12.583
	CNS0095602	Golden flower (diploid) 2	14.144
	CNS0095603	Golden flower (diploid) 3	14.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.482
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.080
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.477
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.263
	CNS0095610	Silvery flower (tetraploid) 1	25.088
	CNS0095611	Silvery flower (tetraploid) 2	7.376
	CNS0095612	Silvery flower (tetraploid) 3	12.055
	CNS0095613	Golden flower (tetraploid) 1	7.511
	CNS0095614	Golden flower (tetraploid) 2	12.786
	CNS0095615	Golden flower (tetraploid) 3	6.248
CRA001975	CRR073297	Stem 1	40.822
	CRR073298	Stem 2	36.854
	CRR073299	Stem 3	38.277
	CRR073300	Leaf 1	20.501
	CRR073301	Leaf 2	22.873
	CRR073302	Leaf 3	22.796
	CRR073303	Juvenile bud 1	26.148
	CRR073304	Juvenile bud 2	7.649
	CRR073305	Juvenile bud 3	22.827
	CRR073306	Third green 1	8.813
	CRR073307	Third green 2	9.027
	CRR073308	Third green 3	13.521
	CRR073309	Second white 1	6.891
	CRR073310	Second white 2	10.063
	CRR073311	Second white 3	9.520
	CRR073312	Silver flowering 1	11.590
	CRR073313	Silver flowering 2	13.982
	CRR073314	Silver flowering 3	13.311
	CRR073315	Gold flowering 1	10.600
	CRR073316	Gold flowering 2	12.354
	CRR073317	Gold flowering 3	9.700
	CRR073318	Tawny withering 1	28.769
	CRR073319	Tawny withering 2	23.892
	CRR073320	Tawny withering 3	39.310