Gene detail

Detail information of GWHGAAZE018856

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_003633408.1	PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9C952\|CPSF3_ARATH	Cleavage and polyadenylation specificity factor subunit 3-I
trEMBL	tr\|F6HK83\|F6HK83_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55086.1}
TAIR10	AT1G61010.3	cleavage and polyadenylation specificity factor 73-I

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25526581	25531214	+
GWHAAZE00000005	mRNA	25526581	25531214	+
GWHAAZE00000005	exon	25526581	25526685	+
GWHAAZE00000005	exon	25526927	25527024	+
GWHAAZE00000005	exon	25527677	25527722	+
GWHAAZE00000005	exon	25528014	25528123	+
GWHAAZE00000005	exon	25528210	25528255	+
GWHAAZE00000005	exon	25528330	25528479	+
GWHAAZE00000005	exon	25529572	25530508	+
GWHAAZE00000005	exon	25530610	25531214	+
GWHAAZE00000005	CDS	25526581	25526685	+
GWHAAZE00000005	CDS	25526927	25527024	+
GWHAAZE00000005	CDS	25527677	25527722	+
GWHAAZE00000005	CDS	25528014	25528123	+
GWHAAZE00000005	CDS	25528210	25528255	+
GWHAAZE00000005	CDS	25528330	25528479	+
GWHAAZE00000005	CDS	25529572	25530508	+
GWHAAZE00000005	CDS	25530610	25531214	+

Transcript Sequence
>GWHTAAZE018878 ATGCCAGCAAGAGAAGGGGATCAGCTAATTATAACCCCTCTAGGAGCTGGCAATGAAGTTGGCCGATCCTGCGTCTATATGACTTACAAAGGGAAGACCGTCTTGTTTGACTGTGGAATTCATCCCGCATACTCGGGCATGGCTGCTTTGCCATACTTCGATGAAATCGATCCTTCAACAATCGATGTTCTGCTCATTACTCAGGCTAGTATTGTCCGTTGTCACCGTCTCCCTGGAAACAGTAGACCGGATTTGAATGGCCCAGACATAAGGTTGGTGGTTAAGCAGTGTGTGATGAGGTGGAAGCCTCTTATTATTCGTTTCCAAGAGCTAAATTTTGAGGAGGTTACAGGCGAATGCTTTCACTTGGATCATGCTGCATCCCTTCCCTACTTTCTGGAAAAGACCACGTTCAAAGGGAGAGTTTTCATGACCCATGCAACAAAGGCTATCTACAAGTTGCTTTTGACGGATTATGTGAAAGTAAGCAAGGTTTCAGTTGAAGATATGTTGTATGATGAACAAGACATTCTTCGCTCCATGGATAAAATTGAGGTGGTCGATTTCCATCAGACTGTAGAAGTGAACGGAATCCGCTTCTGGTGTTACACTGCTGGCCATGTCCTTGGTGCGGCCATGTTCATGGTTGACATAGCCGGTGTTCGAGTCCTATACACTGGAGACTATTCACGCGAAGAAGACCGGCATCTTCGTGCTGCTGAGCTCCCACAATTCTCCCCTGATATATGCATCATTGAATCCACTTACGGTGTTCAACTCCATCAATCTAGAACCATTAGAGAAAAACGCTTCACTGATGTAATTCACAATACTGTCTCTCAAGGTGGTCGTGTTCTAATTCCCGCTTATGCCCTTGGCCGTGCACAAGAACTCCTCTTGATACTCGACGAGTATTGGTCAAACCACCCCGAGCTCCACAACATCCCTATATACTACGCTTCTCCCCTTGCAAAACGCTGCATGGCCGTTTACCAAACCTACATAAACTCGATGAATGAGAGGATCCGAAACCAATTTGCCGACTCGAACCCGTTCGATTTTCGCCACATATCACCATTGAAGAGTATCGAAAATTTCAAGGACGTGGGTCCATCAGTGGTGATGGCGAGCCCCGGTGGGCTCCAGAGCGGGTTATCGAGACAGCTGTTCGACAAATGGTGTGCCGACAAGAAGAATGCTTGTGTGATACCTGGGTACATTGTCGAAGGGACCTTAGCGAAAACTATCATTAACGAACCGAAAGAAGTTAGCCTCATGAATGGACTCACTGCCCCACTCAACATGCAGGTTCACTACATTTCCTTCTCTGCTCACGCAGATTACAATCAAACGAGCACATTCTTGCAAGAGCTTATGCCCCCTAACATTATACTTGTTCACGGTGGAGCTAATGAGATGATGAGGCTGAAGCAAAAGCTCGTCTCGCTTTTTACCGACTTTAACACCAAGATTATTACCCCAAGAACTGTCATAAAGAAAGGGTTTACGTATCAAATAATGGCACCCGATGACCTCCATATCTTTTCGCAGCTATCAACAGGGAATGTTACACAAAGGATCACTATCCCTTATTCGGGTGCCTTTGGGGTGATAAAACACAGGCTGAAGCAGATATACGAGAGCGTAGAATCTTCAACAGACGAGGAATCAAATGTACAGACTTTACGGGTCCATGAACGGGTAACTGTGAAACATGAATCGGAGAACCATATCTCGTTGCATTGGACAGCGGACCCCATTAGTGACATGGTGTCGGACTCGATTGTGGCTCTTGTTTTGAATGCGAGCAGGGAGATTCCTAAGGTGGTGGTGGAGTCCGAGCCGGTGGTTGATGAAGTGGAGGAGGAGAAGAAAGCCGAGAAAATCGTACACGCACTCCTTGTTTCTCTCTTTGGAGATGTAAAGCTCGGGGAGAACGGGAACCTGGTGATCACCGTTGACGGGAATGTGGCAATTCTCGATAAACAGACTGGCAATATTGAAGGAGAAAACGAAGGGCTTAAAGAGCGAGTGAGGACCGTGTTCAGGCGGATTCAAAATGCTGTGAAGCCAATTCCTCTTTCTGCCTCTTATTAG

Network for GWHGAAZE018856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16661.6	Lactamase_B_6	131	243	1.40E-10
PF10996.9	Beta-Casp	295	416	4.80E-27
PF07521.13	RMMBL	430	480	4.70E-15
PF11718.9	CPSF73-100_C	498	691	8.90E-42

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14403	CPSF3, YSH1	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.462
	SRR3591706	second leaf	8.287
	SRR3591707	mature leaf	12.335
	SRR3591708	Shoot apex	18.083
	SRR3591709	Stem	20.776
	SRR3591710	White floral bud	9.661
	SRR3591711	White flower	14.940
	SRR3591712	Green floral bud	11.169
	SRR3591713	Yellow flower	13.684
SRP173429	SRR8316895	Juvenile bud stage	10.014
	SRR8316896	Juvenile bud stage	12.200
	SRR8316897	Juvenile bud stage	6.385
	SRR8316894	Third green stage	4.738
	SRR8316900	Third green stage	12.505
	SRR8316901	Third green stage	11.788
	SRR8316898	Complete white stage	2.553
	SRR8316899	Complete white stage	19.389
	SRR8316903	Complete white stage	4.861
	SRR8316902	Silver flowering stage	3.311
	SRR8316904	Silver flowering stage	4.415
	SRR8316905	Silver flowering stage	2.080
	SRR8316906	Gold flowering stage	12.721
	SRR8316907	Gold flowering stage	9.500
	SRR8316908	Gold flowering stage	13.842
SRP132670	SRR6706286	Control	16.643
	SRR6706287	Light intensity 50%	14.068
	SRR6706288	Light intensity 20%	13.409
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.030
	CNS0095593	Slightly white alabastrum(diploid) 2	8.933
	CNS0095594	Slightly white alabastrum(diploid) 3	9.834
	CNS0095595	Whole white alabastrum(diploid) 2	9.173
	CNS0095596	Whole white alabastrum(diploid) 3	6.875
	CNS0095597	Whole white alabastrum(diploid) 4	7.740
	CNS0095598	Silvery flower (diploied) 1	17.956
	CNS0095599	Silvery flower (diploied) 2	11.252
	CNS0095600	Silvery flower (diploied) 3	12.439
	CNS0095601	Golden flower (diploid) 1	19.054
	CNS0095602	Golden flower (diploid) 2	23.999
	CNS0095603	Golden flower (diploid) 3	24.320
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.565
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.378
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.614
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.940
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.917
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.543
	CNS0095610	Silvery flower (tetraploid) 1	8.462
	CNS0095611	Silvery flower (tetraploid) 2	12.797
	CNS0095612	Silvery flower (tetraploid) 3	4.094
	CNS0095613	Golden flower (tetraploid) 1	8.291
	CNS0095614	Golden flower (tetraploid) 2	9.510
	CNS0095615	Golden flower (tetraploid) 3	7.057
CRA001975	CRR073297	Stem 1	22.970
	CRR073298	Stem 2	20.394
	CRR073299	Stem 3	23.599
	CRR073300	Leaf 1	20.971
	CRR073301	Leaf 2	24.633
	CRR073302	Leaf 3	19.717
	CRR073303	Juvenile bud 1	19.440
	CRR073304	Juvenile bud 2	13.671
	CRR073305	Juvenile bud 3	26.386
	CRR073306	Third green 1	0.537
	CRR073307	Third green 2	0.476
	CRR073308	Third green 3	1.105
	CRR073309	Second white 1	2.554
	CRR073310	Second white 2	1.740
	CRR073311	Second white 3	2.448
	CRR073312	Silver flowering 1	3.871
	CRR073313	Silver flowering 2	4.748
	CRR073314	Silver flowering 3	2.518
	CRR073315	Gold flowering 1	16.262
	CRR073316	Gold flowering 2	26.646
	CRR073317	Gold flowering 3	20.928
	CRR073318	Tawny withering 1	29.639
	CRR073319	Tawny withering 2	21.686
	CRR073320	Tawny withering 3	18.165