Gene detail

Detail information of GWHGAAZE018824

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002528618.1	2.20108E-09	protein with unknown function [Ricinus communis]
trEMBL	tr\|B9SRJ9\|B9SRJ9_RICCO	8E-10	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF33776.1}
TAIR10	AT4G11770.1	0.0005	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	25027664	25041937	+
GWHAAZE00000005	mRNA	25027664	25041937	+
GWHAAZE00000005	exon	25027664	25028498	+
GWHAAZE00000005	exon	25028891	25028913	+
GWHAAZE00000005	exon	25030098	25030300	+
GWHAAZE00000005	exon	25034334	25034424	+
GWHAAZE00000005	exon	25034843	25034976	+
GWHAAZE00000005	exon	25035097	25035168	+
GWHAAZE00000005	exon	25038232	25038430	+
GWHAAZE00000005	exon	25038541	25038623	+
GWHAAZE00000005	exon	25040103	25040142	+
GWHAAZE00000005	exon	25041317	25041392	+
GWHAAZE00000005	exon	25041633	25041937	+
GWHAAZE00000005	CDS	25027664	25028498	+
GWHAAZE00000005	CDS	25028891	25028913	+
GWHAAZE00000005	CDS	25030098	25030300	+
GWHAAZE00000005	CDS	25034334	25034424	+
GWHAAZE00000005	CDS	25034843	25034976	+
GWHAAZE00000005	CDS	25035097	25035168	+
GWHAAZE00000005	CDS	25038232	25038430	+
GWHAAZE00000005	CDS	25038541	25038623	+
GWHAAZE00000005	CDS	25040103	25040142	+
GWHAAZE00000005	CDS	25041317	25041392	+
GWHAAZE00000005	CDS	25041633	25041937	+

Transcript Sequence
>GWHTAAZE018846 ATGGAAGAGGAGAAGCGAAGAGAAAAGTATGGGAAAAACACGAAAGATGGAGAGGAGGAATACCTCTATCTCTATATTGTACTACGGGAAGATCTATGTCGCATCAATCTCACTCAGCTTCTTCTTCTCGAGGAGGAGGAGGAGGATAGAAGCAAATCCCCTATTGAAACTCTTTTACACTTCCCGAACAAGGATCTTCCCGTGGGGATCGGGGCATTTGCCTACGATTCCAACGTGTATTTGCTTGGCGGTGAGGTCTTGAACAAGGGGGGGCGTCTTCGATCGGATTCTTCTCTATCCGATCCGAGTCTCTTCAAAAGACTGAGCGATTGCATGTTTCTCTACGATCCTCATCGTCATCGAATACAAGAGATTTCTTCCATGAATTCCCCGAAACCATGTCCCCAGGTTGCCATAGTGGATGGGAAAGTTTATGTTTTTTCTGGGCAGCACCACTGTTACAGGGGGGAGGTCTGCATACCCTTTGAGCGTTACGACCCAATCGAAAACTCCTGGGAAGCCCTGCCTGACCCTCGTGGTCTGTATTGTAGTTGGCCTATATTTAACCTCTATGTGTCAGTCGTTGGCCCACATATCTTTGTGAGGAGGCATGCGGTTCTTTACACTTATAACGTACGCGACTGCACCTGGACCAATTCCAGGTGCGTGGAGGATAGTCCGTTTAGGTTTAAGGGACACGTAGTAGCCCAGTCTGATGATGATGGTATAATAGTAGCTTATACTACTAGAGGGCTAGTGGCATATAAAGATGCCACTCTAGGACGTGCCCAAGTACTGAAGGAACTCAATAAGGCTTTTCCACCCCCTTGTTGGTGTGCCAAGGATCTAACAGGCCAGGGTAAGGATTGGGAGACTGAAGTTTCATCATCTGCTGAAGATTTAAATGAAACAAAGGAACCTGCTTTTGCTGACCAGTCAGTTGCGTCCCAGATGATAAACAAGCTTAGTATTTATGGAAATCCTACTGCAGTAAGTACTACTGATGATGAAAGAATTCGAGCACTAACAGATGAGGTAAGGACTTTTCACATGCTTGTTAGCACCACTGTTACAGGGAGGTCTGCTTTCCCTTTGAGTGTTACGACCCAACAGAAAACTCCTGGGAAGCCCTGCCTGACCCTCATTTCTACTGAGGAGGAGGAGGCAGACACCCATGAGGGGGAGGTGGCAAAAGACTTTTGCAGTGTGACTCTATTGAGACATAAGATATACAATGCAACTGATATCACGAGTGAAATGTTAAACCCCACCAATGTTTTCACCATGCGTGAAGGATCTAACAAGCAAGGTGTGGACTGCTTGGGAGTTTTTCAAATGGGCAAAGATAGATCGAATAGGGCTAGCAGTGCAGATGAAGGCAATGGAGGAGGTGGAGAAGTGAAAGGATTGCCCCAGTTGAGCCAAACCCTACAAGAAAGCGAGAGATTTCTTTCCCAAGCTGGAAGACCTGGTGGAACCCTAAAAGTGCCACTTCAAACTAGTGCTGATTATGTTCCTCAAGATGAAGATGCAGTTCAGCAATCCAAAGAAGCCCTGGCTGCAGGTGTAGCGCCTAGACACAGAGTCATACGACCTGGACCCATGCGAGGCGCTACAACTGCATTGCGCTTTGTGTCTAGACTGAACCGATTTGAGTTGGCTTACTCTGTTCCTGCTGAGGGTAAAGATTTGAAGAATGAAGTTTCGTCATCTGCTGAAGATGTAAATGAAGCAAAGGAACCTGTTGTTGACGAAGAATTTACTGAACAATTTTTACCTTTTTTTGGTGGGTGGTTGGGTTTGCAGATTCAAATTATAATGCGGAAATCAGGTTTCAACAAAAAACATCAGGCGATAGTGGATGCTTTGTTCAGGGAAATGAAATTTTTGGAGCTTCAGAAAAAAAAGCTCAAATTGCAAAGCAAGTCCCTCATCAAGTCGTTAGCCTTCAGTTTCCTATCGTGTGATTCTGCCAGACTCGAGAATTTAGACACAAGCACATTTACCACAGCGGCAGGAAGAGGAGGAGGTTGCTGGGACCTGGAAACCCGACAAGAGTGA

Network for GWHGAAZE018824

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07893.14	DUF1668	110	235	8.60E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14294	WIBG, PYM	RNA transport	map03013
K14294	WIBG, PYM	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.828
	SRR3591706	second leaf	11.616
	SRR3591707	mature leaf	14.713
	SRR3591708	Shoot apex	27.539
	SRR3591709	Stem	23.261
	SRR3591710	White floral bud	25.325
	SRR3591711	White flower	33.711
	SRR3591712	Green floral bud	27.058
	SRR3591713	Yellow flower	28.143
SRP173429	SRR8316895	Juvenile bud stage	11.884
	SRR8316896	Juvenile bud stage	17.444
	SRR8316897	Juvenile bud stage	4.093
	SRR8316894	Third green stage	7.756
	SRR8316900	Third green stage	17.713
	SRR8316901	Third green stage	17.242
	SRR8316898	Complete white stage	4.204
	SRR8316899	Complete white stage	13.531
	SRR8316903	Complete white stage	13.985
	SRR8316902	Silver flowering stage	8.198
	SRR8316904	Silver flowering stage	14.604
	SRR8316905	Silver flowering stage	6.003
	SRR8316906	Gold flowering stage	18.975
	SRR8316907	Gold flowering stage	18.763
	SRR8316908	Gold flowering stage	9.322
SRP132670	SRR6706286	Control	18.339
	SRR6706287	Light intensity 50%	19.498
	SRR6706288	Light intensity 20%	20.844
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.720
	CNS0095593	Slightly white alabastrum(diploid) 2	12.980
	CNS0095594	Slightly white alabastrum(diploid) 3	11.803
	CNS0095595	Whole white alabastrum(diploid) 2	11.633
	CNS0095596	Whole white alabastrum(diploid) 3	9.814
	CNS0095597	Whole white alabastrum(diploid) 4	12.151
	CNS0095598	Silvery flower (diploied) 1	19.511
	CNS0095599	Silvery flower (diploied) 2	12.101
	CNS0095600	Silvery flower (diploied) 3	10.673
	CNS0095601	Golden flower (diploid) 1	16.103
	CNS0095602	Golden flower (diploid) 2	13.212
	CNS0095603	Golden flower (diploid) 3	12.344
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.116
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.036
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.081
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.028
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.402
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.546
	CNS0095610	Silvery flower (tetraploid) 1	21.547
	CNS0095611	Silvery flower (tetraploid) 2	17.592
	CNS0095612	Silvery flower (tetraploid) 3	18.216
	CNS0095613	Golden flower (tetraploid) 1	10.610
	CNS0095614	Golden flower (tetraploid) 2	15.094
	CNS0095615	Golden flower (tetraploid) 3	10.951
CRA001975	CRR073297	Stem 1	16.992
	CRR073298	Stem 2	13.430
	CRR073299	Stem 3	2.814
	CRR073300	Leaf 1	16.050
	CRR073301	Leaf 2	16.085
	CRR073302	Leaf 3	2.950
	CRR073303	Juvenile bud 1	2.764
	CRR073304	Juvenile bud 2	1.219
	CRR073305	Juvenile bud 3	3.399
	CRR073306	Third green 1	1.390
	CRR073307	Third green 2	0.803
	CRR073308	Third green 3	1.797
	CRR073309	Second white 1	1.399
	CRR073310	Second white 2	1.838
	CRR073311	Second white 3	1.383
	CRR073312	Silver flowering 1	1.079
	CRR073313	Silver flowering 2	2.231
	CRR073314	Silver flowering 3	0.663
	CRR073315	Gold flowering 1	1.187
	CRR073316	Gold flowering 2	1.781
	CRR073317	Gold flowering 3	0.567
	CRR073318	Tawny withering 1	4.739
	CRR073319	Tawny withering 2	6.817
	CRR073320	Tawny withering 3	5.218