Gene detail

Detail information of GWHGAAZE018808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266017.2	3.2282E-128	PREDICTED: probable WRKY transcription factor 9 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9C9F0\|WRKY9_ARATH	2E-71	Probable WRKY transcription factor 9
trEMBL	tr\|F6H1R3\|F6H1R3_VITVI	4E-126	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46132.1}
TAIR10	AT1G68150.1	3E-42	WRKY DNA-binding protein 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24631316	24634216	-
GWHAAZE00000005	mRNA	24631316	24634216	-
GWHAAZE00000005	exon	24631316	24631900	-
GWHAAZE00000005	exon	24632661	24633248	-
GWHAAZE00000005	exon	24633602	24633724	-
GWHAAZE00000005	exon	24634088	24634216	-
GWHAAZE00000005	CDS	24634088	24634216	-
GWHAAZE00000005	CDS	24633602	24633724	-
GWHAAZE00000005	CDS	24632661	24633248	-
GWHAAZE00000005	CDS	24631316	24631900	-

Transcript Sequence
>GWHTAAZE018830 ATGGAATCACATGATAATCAAGTACAACAAGTCCTGCAGGAGGTACAAGATAATAGAGAAGAAGGCGAGCATGCAGGAAATGATTCATCTTTGAGCATATCCTTACAAGAAAACTCCAAGATGGAAGAGATGCAAATGAACAAGATGAAAGAGGAGAACAAGGAGTTGAGAAAAGTGATAGAGAAAACAATGAAAGATTACCATGACCTTCAAATGAAATTTGCAGCTATTGCGCAAAATAACCAAAGCAAGGATCCAAAATTCTGTCTGTCACTCAATGGTAATAACAACGGCGGGATTGAAGAACCAAAGGGAATTAGTACAAGAATCATGGAGATGAATAACAACCAAACACCACCACCCTCATCATCATCATTAGAACGGGAGAGTGAATTAGGGTTATCCTTAGGGTTACAAAACAATGATAATAGAAAACAACAGCAAGAAAGAGAAGAAGAAGGTGATCATCATCATCATGAAGTGATGAACAAGGAGTTGAATTTGACAAGATTTGGACCAACACAAAGCAGCAAGCTACAAAAGAGTGATTTTGGTGGAATTACTACCGGCCATGTTAATTCCCCACCAAATAGAAAAGCTAGGGTTTCAGTTAGAGCAAGATGCGAAGCTGCCACTGTGAGTTTTTTTTTTTTTGCTTTATATCATTTTTTGTAAATTAATTTCTTTAGCTCAATTATATTTATTCACTTATTTATTTTTTTGCAGATGAATGATGGATGCCAATGGAGAAAATATGGGCAAAAAATTGCAAAAGGAAATCCATGTCCTCGAGCTTATTATCGTTGCACCGTAGCACCAGGATGCCCAGTTAGAAAACAGGTGCAAAGATGTTCGGAAGACATGTCAATCCTAATCACAACATACGAAGGGAATCACAACCATCCACTTCCAGTAGGGGCCACAGCAATGGCATCAACAGCCTCAGCTGCATCATCCTTCATGCTTCTCGACACCAGCATTAACCATCCCCTCTCCTCCGAGGGCATCTCTAACTTCACTCACCACACGTCATCTTTTCCATACTACACTTCCGCTTACTCCACCTTACCCTTCACAAACCCTAATAATAAAGACCCTTCTAAGGGCATGGTCCTTGATCTCACCAACAATGTTTCTTCCCAAAATGCCCTCCACCATTTTCCCATGCCTCCTAGCTCCTCCTCAAATGCCTCTGGATTTTCTTGGCTTCCAAACAACAACCCAAGCAATGGTGGTGGTTATGGTAATTTGAGTGATCACTTTCGAGTTCCTAGGTCACAGGCGGGTGATAATAGCAATTCCTTGGCTGAGAATGTGAATGCAATTGCTTTTGATCCCAAGTTTAGGGTTGCTGTCGCCGCCGCCATTTCCTCCCTCATTAATAAAGAAGCCCAAACAAGTACTCATCCTACTGGCCCTTCTTAA

Network for GWHGAAZE018808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03106.16	WRKY	243	301	7.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.197
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.225
	SRR3591709	Stem	0.141
	SRR3591710	White floral bud	0.368
	SRR3591711	White flower	0.092
	SRR3591712	Green floral bud	0.273
	SRR3591713	Yellow flower	0.496
SRP173429	SRR8316895	Juvenile bud stage	0.245
	SRR8316896	Juvenile bud stage	0.229
	SRR8316897	Juvenile bud stage	0.074
	SRR8316894	Third green stage	0.038
	SRR8316900	Third green stage	0.038
	SRR8316901	Third green stage	0.126
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.371
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.067
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.037
	SRR8316906	Gold flowering stage	0.236
	SRR8316907	Gold flowering stage	0.044
	SRR8316908	Gold flowering stage	0.314
SRP132670	SRR6706286	Control	0.084
	SRR6706287	Light intensity 50%	0.034
	SRR6706288	Light intensity 20%	0.051
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.189
	CNS0095593	Slightly white alabastrum(diploid) 2	1.012
	CNS0095594	Slightly white alabastrum(diploid) 3	0.322
	CNS0095595	Whole white alabastrum(diploid) 2	0.364
	CNS0095596	Whole white alabastrum(diploid) 3	0.041
	CNS0095597	Whole white alabastrum(diploid) 4	0.847
	CNS0095598	Silvery flower (diploied) 1	0.743
	CNS0095599	Silvery flower (diploied) 2	0.113
	CNS0095600	Silvery flower (diploied) 3	0.344
	CNS0095601	Golden flower (diploid) 1	0.078
	CNS0095602	Golden flower (diploid) 2	0.661
	CNS0095603	Golden flower (diploid) 3	0.353
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.159
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.073
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.108
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.414
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.097
	CNS0095610	Silvery flower (tetraploid) 1	0.174
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.160
	CNS0095613	Golden flower (tetraploid) 1	0.258
	CNS0095614	Golden flower (tetraploid) 2	0.367
	CNS0095615	Golden flower (tetraploid) 3	0.237
CRA001975	CRR073297	Stem 1	1.542
	CRR073298	Stem 2	1.164
	CRR073299	Stem 3	0.137
	CRR073300	Leaf 1	0.251
	CRR073301	Leaf 2	0.444
	CRR073302	Leaf 3	0.061
	CRR073303	Juvenile bud 1	0.181
	CRR073304	Juvenile bud 2	0.156
	CRR073305	Juvenile bud 3	0.628
	CRR073306	Third green 1	0.121
	CRR073307	Third green 2	0.147
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.209
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.028
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.473
	CRR073315	Gold flowering 1	0.034
	CRR073316	Gold flowering 2	0.074
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	6.246
	CRR073319	Tawny withering 2	2.053
	CRR073320	Tawny withering 3	5.907