Gene detail

Detail information of GWHGAAZE018795

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010911945.1	3.80598E-81	PREDICTED: glycine-rich RNA-binding protein RZ1A-like [Elaeis guineensis]
Swissprot	tr\|Q9LIN3\|RZ1A_ARATH	2E-71	Glycine-rich RNA-binding protein RZ1A {ECO:0000305}
trEMBL	tr\|A0A067KMU6\|A0A067KMU6_JATCU	1E-79	Uncharacterized protein {ECO:0000313\|EMBL:KDP37561.1}
TAIR10	AT3G26420.1	1E-40	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24405987	24407996	+
GWHAAZE00000005	mRNA	24405987	24407996	+
GWHAAZE00000005	exon	24405987	24406097	+
GWHAAZE00000005	exon	24407263	24407746	+
GWHAAZE00000005	exon	24407893	24407996	+
GWHAAZE00000005	CDS	24405987	24406097	+
GWHAAZE00000005	CDS	24407263	24407746	+
GWHAAZE00000005	CDS	24407893	24407996	+

Transcript Sequence
>GWHTAAZE018817 ATGTCAGATGATGTGGAATACCGCTGCTTTATTGGTGGCCTTGCATGGGCAACATCTGACAGAGTTTTAAAAGGTGCCTTCGAAAAGTTCGGTCATCTTCTTGATGCAAAGGTGGTTGTGGACAAGGAGAGTGGACGTTCTCGTGGATTTGGGTTCGTTACTTTTGATGACAAGCAAGCAATGGAAGATGCCATCGAAGCAATGAATGGAATTGATTTAGACGGGAGAAATATTACAGTGGATAAGGCTCAACCCCAGCAAGGTTCCGGTAGGGACCGCGATAGTGACCGCTCTCGCGACCGAGGCCGTGATCGCAATCGTGACTATGGAGGAGGTGGTCGGGGATCTGGTGGTGGAGAGTGCTATAAGTGTGGTAAGCCAGGACATTTTGCTAGGGAATGTCCAGGTGAAGGGGCTAGAGGGGGTGGTGGGTATGGTGGCAGGGATGACAGGTATGGCGGTGGTGGTCGTAGTGGTGGCCGTTTTGGGCCTGATCGGAATGGAGATCGATATGGTGGACGCAACAGGGAAGGCGGTGGCCGTGGGGGAGGTGATCGTTATAGTCGTGACCGGTCTGGACCATATGACCGTCGGGCTGAAGAATTGGTGGCTGGTGCTGCTTGTGGATGCAAAGAGCTGGGAGTTTCTTTCTTTGAGATTTCTTCGTTCTTGATGTGTGGGCAAATTAGGTCAATGTAG

Network for GWHGAAZE018795

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	10	78	8.00E-20
PF00098.24	zf-CCHC	120	135	8.80E-08

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12885	RBMX, HNRNPG	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.084
	SRR3591706	second leaf	33.219
	SRR3591707	mature leaf	46.100
	SRR3591708	Shoot apex	74.665
	SRR3591709	Stem	52.429
	SRR3591710	White floral bud	44.801
	SRR3591711	White flower	61.461
	SRR3591712	Green floral bud	46.941
	SRR3591713	Yellow flower	36.864
SRP173429	SRR8316895	Juvenile bud stage	42.027
	SRR8316896	Juvenile bud stage	65.165
	SRR8316897	Juvenile bud stage	36.764
	SRR8316894	Third green stage	21.183
	SRR8316900	Third green stage	52.116
	SRR8316901	Third green stage	60.403
	SRR8316898	Complete white stage	15.751
	SRR8316899	Complete white stage	61.941
	SRR8316903	Complete white stage	34.187
	SRR8316902	Silver flowering stage	19.719
	SRR8316904	Silver flowering stage	23.399
	SRR8316905	Silver flowering stage	12.873
	SRR8316906	Gold flowering stage	36.017
	SRR8316907	Gold flowering stage	34.432
	SRR8316908	Gold flowering stage	45.336
SRP132670	SRR6706286	Control	94.682
	SRR6706287	Light intensity 50%	94.099
	SRR6706288	Light intensity 20%	102.287
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	39.940
	CNS0095593	Slightly white alabastrum(diploid) 2	41.360
	CNS0095594	Slightly white alabastrum(diploid) 3	39.725
	CNS0095595	Whole white alabastrum(diploid) 2	37.737
	CNS0095596	Whole white alabastrum(diploid) 3	16.675
	CNS0095597	Whole white alabastrum(diploid) 4	24.897
	CNS0095598	Silvery flower (diploied) 1	53.972
	CNS0095599	Silvery flower (diploied) 2	50.756
	CNS0095600	Silvery flower (diploied) 3	35.001
	CNS0095601	Golden flower (diploid) 1	46.346
	CNS0095602	Golden flower (diploid) 2	45.753
	CNS0095603	Golden flower (diploid) 3	42.922
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.265
	CNS0095605	Slightly white alabastrum(tetraploid) 2	28.480
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.344
	CNS0095607	Whole white alabastrum(tetraploid) 1	28.959
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.761
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.838
	CNS0095610	Silvery flower (tetraploid) 1	57.302
	CNS0095611	Silvery flower (tetraploid) 2	38.660
	CNS0095612	Silvery flower (tetraploid) 3	22.658
	CNS0095613	Golden flower (tetraploid) 1	42.191
	CNS0095614	Golden flower (tetraploid) 2	47.406
	CNS0095615	Golden flower (tetraploid) 3	24.612
CRA001975	CRR073297	Stem 1	45.058
	CRR073298	Stem 2	42.573
	CRR073299	Stem 3	41.763
	CRR073300	Leaf 1	38.756
	CRR073301	Leaf 2	44.082
	CRR073302	Leaf 3	33.870
	CRR073303	Juvenile bud 1	28.607
	CRR073304	Juvenile bud 2	16.507
	CRR073305	Juvenile bud 3	41.811
	CRR073306	Third green 1	6.661
	CRR073307	Third green 2	7.187
	CRR073308	Third green 3	7.931
	CRR073309	Second white 1	6.044
	CRR073310	Second white 2	4.924
	CRR073311	Second white 3	5.653
	CRR073312	Silver flowering 1	6.213
	CRR073313	Silver flowering 2	5.514
	CRR073314	Silver flowering 3	2.628
	CRR073315	Gold flowering 1	21.733
	CRR073316	Gold flowering 2	34.730
	CRR073317	Gold flowering 3	43.119
	CRR073318	Tawny withering 1	37.022
	CRR073319	Tawny withering 2	58.245
	CRR073320	Tawny withering 3	28.697