Detail information of GWHGAAZE018787


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI20026.34.19344E-53unnamed protein product [Vitis vinifera]
Swissprottr|Q66GI4|PRRP1_ARATH5E-44Proteinaceous RNase P 1, chloroplastic/mitochondrial (Precursor)
trEMBLtr|W5AXB4|W5AXB4_WHEAT2E-54Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_2AL_D31914DE6.2}
TAIR10AT2G32230.12E-38proteinaceous RNase P 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2434402724345425-
GWHAAZE00000005mRNA2434402724345425-
GWHAAZE00000005exon2434402724344254-
GWHAAZE00000005exon2434435424344422-
GWHAAZE00000005exon2434513024345300-
GWHAAZE00000005exon2434537224345425-
GWHAAZE00000005CDS2434537224345425-
GWHAAZE00000005CDS2434513024345300-
GWHAAZE00000005CDS2434435424344422-
GWHAAZE00000005CDS2434402724344254-
Transcript Sequence

Network for GWHGAAZE018787

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16953.6PRORP351238.70E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18213PRORP RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.621
SRR3591706second leaf12.918
SRR3591707mature leaf7.000
SRR3591708Shoot apex21.830
SRR3591709Stem9.782
SRR3591710White floral bud8.589
SRR3591711White flower15.798
SRR3591712Green floral bud16.086
SRR3591713Yellow flower12.002
SRP173429 SRR8316895Juvenile bud stage 10.481
SRR8316896Juvenile bud stage 13.903
SRR8316897Juvenile bud stage 10.916
SRR8316894Third green stage 6.757
SRR8316900Third green stage 13.090
SRR8316901Third green stage 16.411
SRR8316898Complete white stage 4.368
SRR8316899Complete white stage 10.036
SRR8316903Complete white stage 5.187
SRR8316902Silver flowering stage5.100
SRR8316904Silver flowering stage7.092
SRR8316905Silver flowering stage3.662
SRR8316906Gold flowering stage 8.599
SRR8316907Gold flowering stage 9.555
SRR8316908Gold flowering stage 11.472
SRP132670SRR6706286Control8.932
SRR6706287Light intensity 50%9.500
SRR6706288Light intensity 20%10.009
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.973
CNS0095593Slightly white alabastrum(diploid) 226.666
CNS0095594Slightly white alabastrum(diploid) 322.112
CNS0095595Whole white alabastrum(diploid) 217.966
CNS0095596Whole white alabastrum(diploid) 313.525
CNS0095597Whole white alabastrum(diploid) 415.556
CNS0095598Silvery flower (diploied) 113.602
CNS0095599Silvery flower (diploied) 213.244
CNS0095600Silvery flower (diploied) 310.589
CNS0095601Golden flower (diploid) 17.111
CNS0095602Golden flower (diploid) 27.036
CNS0095603Golden flower (diploid) 310.675
CNS0095604Slightly white alabastrum(tetraploid) 118.611
CNS0095605Slightly white alabastrum(tetraploid) 219.110
CNS0095606Slightly white alabastrum(tetraploid) 318.562
CNS0095607Whole white alabastrum(tetraploid) 114.086
CNS0095608Whole white alabastrum(tetraploid) 214.662
CNS0095609Whole white alabastrum(tetraploid) 311.586
CNS0095610Silvery flower (tetraploid) 113.708
CNS0095611Silvery flower (tetraploid) 210.724
CNS0095612Silvery flower (tetraploid) 314.123
CNS0095613Golden flower (tetraploid) 17.812
CNS0095614Golden flower (tetraploid) 210.138
CNS0095615Golden flower (tetraploid) 36.955
CRA001975CRR073297Stem 110.254
CRR073298Stem 28.401
CRR073299Stem 313.819
CRR073300Leaf 17.984
CRR073301Leaf 29.657
CRR073302Leaf 36.655
CRR073303Juvenile bud 18.854
CRR073304Juvenile bud 25.453
CRR073305Juvenile bud 38.414
CRR073306Third green 11.757
CRR073307Third green 21.544
CRR073308Third green 32.030
CRR073309Second white 17.317
CRR073310Second white 26.709
CRR073311Second white 37.697
CRR073312Silver flowering 14.246
CRR073313Silver flowering 24.435
CRR073314Silver flowering 34.536
CRR073315Gold flowering 17.675
CRR073316Gold flowering 210.538
CRR073317Gold flowering 33.032
CRR073318Tawny withering 19.093
CRR073319Tawny withering 220.592
CRR073320Tawny withering 314.026