Gene detail

Detail information of GWHGAAZE018782

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011004968.1	0	PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
Swissprot	tr\|Q94F62\|BAK1_ARATH	0	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 (Precursor)
trEMBL	tr\|F6MF11\|F6MF11_GOSHI	0	Somatic embryogenesis receptor-like kinase 3 protein {ECO:0000313\|EMBL:AEG25668.1}
TAIR10	AT4G33430.2	3E-142	BRI1-associated receptor kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	24258080	24269234	-
GWHAAZE00000005	mRNA	24258080	24269234	-
GWHAAZE00000005	exon	24258080	24258292	-
GWHAAZE00000005	exon	24259524	24259918	-
GWHAAZE00000005	exon	24260624	24260965	-
GWHAAZE00000005	exon	24261925	24262001	-
GWHAAZE00000005	exon	24262105	24262176	-
GWHAAZE00000005	exon	24262523	24262594	-
GWHAAZE00000005	exon	24262761	24262904	-
GWHAAZE00000005	exon	24263325	24263396	-
GWHAAZE00000005	exon	24263506	24263638	-
GWHAAZE00000005	exon	24268732	24269234	-
GWHAAZE00000005	five_prime_UTR	24268826	24269234	-
GWHAAZE00000005	CDS	24268732	24268825	-
GWHAAZE00000005	CDS	24263506	24263638	-
GWHAAZE00000005	CDS	24263325	24263396	-
GWHAAZE00000005	CDS	24262761	24262904	-
GWHAAZE00000005	CDS	24262523	24262594	-
GWHAAZE00000005	CDS	24262105	24262176	-
GWHAAZE00000005	CDS	24261925	24262001	-
GWHAAZE00000005	CDS	24260624	24260965	-
GWHAAZE00000005	CDS	24259524	24259918	-
GWHAAZE00000005	CDS	24258080	24258292	-

Transcript Sequence
>GWHTAAZE018804 CTTTGACTGCCATCCGTCTTTCTCTCTTTTCTCACTCACAGAGTCAAACAGAGAATCAAAGCCCAGGAAAGTTGAGGAAATTGCCAAATACATTAATTGATACAAAGAAATTGCTAAATTTACGTACAAATTGGAAGAGGGAAAGAGAAATATTGACTAATAAGAGAGCTCCAACGACCTGCTTCCCTCACCTTCGTTAAATTCATCACCCCCGACCACATTCATACCTCCGAATTTTCCCCAGAAAGTGATAAAAAAAAAAAAAAGTGCTCGTTGAAATTTGGGTTTCAATATACCTCTTTCTGGAGTTTTTTTTAAGCTTTGAGGGGTAGTATTTTGTGTGTGAATGAGCTGCTGCTGATGATGAGGATGAGGAATCTAGGTTTTTAGCTGAGGGACCAGCCGTGTGATGGATCGGTCAGCCTCCGGGATCTTGAGTTGTGCTTTCCTTTTGTTTATTCTGCTGTTTTATCCATTGCGCCAGGTCTCCGCTAATTCCGAAGGTGATGCTTTGAATGCTCTGAAGACCAATTTGGCTGATCCTAACAATGTTCTGCAAAGTTGGGATCCTACCCTTGTCAACCCTTGCACTTGGTTCCACGTGACATGTAACAGCGAAAATAGTGTCACCAGAGTTGATCTTGGAAATGCGAACTTATCTGGTGGATTGGTCCAGCGGCTTGGTGATCTTCCAAATTTGCAGTACTTGGAACTTTACAGTAACAACATAAGTGGAAGAATTCCTGACGAGCTGGGGAACCTAACGGACTTAGTGAGCTTGGATCTCTACCTGAACAAATTAACTGGTCCGATCCCAGCCTCGTTGGGCAAGCTTGAGAGGCTGCGTTTCCTTCGGCTCAACAACAACAGCTTGACAGGATCTATTCCTGTATCTTTAACTACCATTACTACACTTCAAGTCCTTGATCTATCAGCCAACCAATTAACAGGAGATATTCCAGTCAATGGCTCCTTTTCACTTTTTACCCCCATCAGTTTTCAGAATAATCTGTTGAATCGGCCTCCAGCTTCTCCACCACCTCCATTTTCTCCAACAGCCCCATCTTCTCCAGCTGAAGAGGATCCAGAAGTTCATCTAGGACAGCTCAAGAGATTCTCCTTACGCGATTTACTAGTTGCTACAGACAATTTTAGCAACAGAAATATTTTGGGAAAAGGTGGATTTGGTAAGGTATACAAAGGACGATTGGCTGACGGCACTTTGGTGGCTGTTAAAAGACTAAAAGAGGAGCGTACTCAAGGTGGGGAGCTGCAGTTCCAAACAGAAATAGAAATGATCAGCATGGCGGTGCACCGTAATCTACTTCGTTTGCGAGGATTTTGCATGACACCAACTGAACGGGTGCTTGTTTATCCTTATATGGAAAATGGAAGTGTCGCATCATGTTTGCGAGATCGACCCGAATCAAATCCCCCTCTAGAATGGCCGATTAGGAAGCAAATCGCACTGGGATCTGCTAGGGGCCTTGCTTATTTGCATGATCATTGTGACCCAAAGATTATTCACAGAGACGTAAAAGCGGCAAACATATTGTTGGATGAGGAGTTTGAAGCAGTTGTTGGTGATTTCGGGTTGGCTAAGCTGATGGACTACAAGGATACTCATGTTACCACTGCTGTACGAGGAACAATTGGGCACATAGCTCCCGAGTATTTATCCACCGGAAAGTCTTCAGAGAAGACAGATGTTTTTGGGTACGGGGTCATGCTTCTTGAGCTTATAACCGGACAGAGGGCTTTTGATCTTGCCCGTCTTGCCAATGATGACGACGTCATGTTGCTTGATTGGGTAAAAGTACTTCTGAAGGAAAAGAAACTAGAAACGCTGGTAGACGCGGATATGAAGGGCAATTATATCGAAGAAGAGGTGGAGGGGCTGATCCAAGTGGCTCTGCTCTGCACACAGGCTCCACCCAACGGAACGCCCCAAGATGTCAGAAGTTGTCAGAATGCTCGAAGGAGATGGGTTAGCAGAGAGGTGGGAGGAGTGGCAAAAGGATGA

Network for GWHGAAZE018782

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	28	68	5.30E-11
PF00069.26	Pkinase	250	466	2.60E-44

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
K13416	BAK1	MAPK signaling pathway - plant	map04016
		Plant hormone signal transduction	map04075
		Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.320
	SRR3591706	second leaf	5.482
	SRR3591707	mature leaf	9.885
	SRR3591708	Shoot apex	7.841
	SRR3591709	Stem	15.815
	SRR3591710	White floral bud	8.152
	SRR3591711	White flower	15.207
	SRR3591712	Green floral bud	6.139
	SRR3591713	Yellow flower	7.827
SRP173429	SRR8316895	Juvenile bud stage	3.712
	SRR8316896	Juvenile bud stage	6.386
	SRR8316897	Juvenile bud stage	2.460
	SRR8316894	Third green stage	1.960
	SRR8316900	Third green stage	4.331
	SRR8316901	Third green stage	4.262
	SRR8316898	Complete white stage	1.215
	SRR8316899	Complete white stage	6.719
	SRR8316903	Complete white stage	2.593
	SRR8316902	Silver flowering stage	1.101
	SRR8316904	Silver flowering stage	2.003
	SRR8316905	Silver flowering stage	1.078
	SRR8316906	Gold flowering stage	6.410
	SRR8316907	Gold flowering stage	3.572
	SRR8316908	Gold flowering stage	6.852
SRP132670	SRR6706286	Control	7.002
	SRR6706287	Light intensity 50%	6.067
	SRR6706288	Light intensity 20%	5.298
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.598
	CNS0095593	Slightly white alabastrum(diploid) 2	4.820
	CNS0095594	Slightly white alabastrum(diploid) 3	4.932
	CNS0095595	Whole white alabastrum(diploid) 2	3.346
	CNS0095596	Whole white alabastrum(diploid) 3	1.385
	CNS0095597	Whole white alabastrum(diploid) 4	2.574
	CNS0095598	Silvery flower (diploied) 1	7.787
	CNS0095599	Silvery flower (diploied) 2	5.471
	CNS0095600	Silvery flower (diploied) 3	4.576
	CNS0095601	Golden flower (diploid) 1	8.200
	CNS0095602	Golden flower (diploid) 2	6.187
	CNS0095603	Golden flower (diploid) 3	6.834
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.746
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.498
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.117
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.512
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.549
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.206
	CNS0095610	Silvery flower (tetraploid) 1	13.369
	CNS0095611	Silvery flower (tetraploid) 2	12.046
	CNS0095612	Silvery flower (tetraploid) 3	13.835
	CNS0095613	Golden flower (tetraploid) 1	6.771
	CNS0095614	Golden flower (tetraploid) 2	11.664
	CNS0095615	Golden flower (tetraploid) 3	6.739
CRA001975	CRR073297	Stem 1	7.455
	CRR073298	Stem 2	6.923
	CRR073299	Stem 3	6.079
	CRR073300	Leaf 1	7.330
	CRR073301	Leaf 2	6.204
	CRR073302	Leaf 3	4.521
	CRR073303	Juvenile bud 1	3.976
	CRR073304	Juvenile bud 2	3.148
	CRR073305	Juvenile bud 3	6.880
	CRR073306	Third green 1	0.649
	CRR073307	Third green 2	1.163
	CRR073308	Third green 3	0.924
	CRR073309	Second white 1	4.632
	CRR073310	Second white 2	1.554
	CRR073311	Second white 3	1.714
	CRR073312	Silver flowering 1	2.371
	CRR073313	Silver flowering 2	2.646
	CRR073314	Silver flowering 3	1.695
	CRR073315	Gold flowering 1	3.893
	CRR073316	Gold flowering 2	9.345
	CRR073317	Gold flowering 3	7.943
	CRR073318	Tawny withering 1	19.679
	CRR073319	Tawny withering 2	22.199
	CRR073320	Tawny withering 3	6.839