Detail information of GWHGAAZE018775


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009795766.14.5763E-158PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Nicotiana sylvestris]
Swissprottr|P27524|CB4A_SOLLC3E-152Chlorophyll a-b binding protein CP24 10A, chloroplastic (Precursor)
trEMBLtr|I1KUE5|I1KUE5_SOYBN2E-158Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G19210.1}
TAIR10AT1G15820.11E-104light harvesting complex photosystem II subunit 6

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2414370824144688-
GWHAAZE00000005mRNA2414370824144688-
GWHAAZE00000005exon2414448924144688-
GWHAAZE00000005exon2414370824144257-
GWHAAZE00000005CDS2414448924144688-
GWHAAZE00000005CDS2414370824144257-
Transcript Sequence

Network for GWHGAAZE018775

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00504.22Chloroa_b-bind612371.20E-49
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K08917LHCB6 Metabolic pathways map01100
Photosynthesis - antenna proteinsmap00196

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf768.945
SRR3591706second leaf4145.103
SRR3591707mature leaf3135.121
SRR3591708Shoot apex1661.263
SRR3591709Stem491.617
SRR3591710White floral bud77.240
SRR3591711White flower103.495
SRR3591712Green floral bud77.915
SRR3591713Yellow flower16.793
SRP173429 SRR8316895Juvenile bud stage 302.398
SRR8316896Juvenile bud stage 290.621
SRR8316897Juvenile bud stage 149.458
SRR8316894Third green stage 78.303
SRR8316900Third green stage 159.816
SRR8316901Third green stage 157.839
SRR8316898Complete white stage 32.043
SRR8316899Complete white stage 112.969
SRR8316903Complete white stage 59.496
SRR8316902Silver flowering stage12.071
SRR8316904Silver flowering stage21.002
SRR8316905Silver flowering stage4.092
SRR8316906Gold flowering stage 12.206
SRR8316907Gold flowering stage 12.673
SRR8316908Gold flowering stage 24.182
SRP132670SRR6706286Control161.257
SRR6706287Light intensity 50%110.123
SRR6706288Light intensity 20%99.706
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1351.545
CNS0095593Slightly white alabastrum(diploid) 2267.062
CNS0095594Slightly white alabastrum(diploid) 3223.259
CNS0095595Whole white alabastrum(diploid) 2178.486
CNS0095596Whole white alabastrum(diploid) 3177.351
CNS0095597Whole white alabastrum(diploid) 4115.272
CNS0095598Silvery flower (diploied) 1313.119
CNS0095599Silvery flower (diploied) 2302.093
CNS0095600Silvery flower (diploied) 3134.479
CNS0095601Golden flower (diploid) 1424.493
CNS0095602Golden flower (diploid) 2259.967
CNS0095603Golden flower (diploid) 3256.615
CNS0095604Slightly white alabastrum(tetraploid) 1428.992
CNS0095605Slightly white alabastrum(tetraploid) 2434.895
CNS0095606Slightly white alabastrum(tetraploid) 3749.398
CNS0095607Whole white alabastrum(tetraploid) 1213.855
CNS0095608Whole white alabastrum(tetraploid) 2157.667
CNS0095609Whole white alabastrum(tetraploid) 3311.730
CNS0095610Silvery flower (tetraploid) 1198.340
CNS0095611Silvery flower (tetraploid) 2240.252
CNS0095612Silvery flower (tetraploid) 373.865
CNS0095613Golden flower (tetraploid) 161.366
CNS0095614Golden flower (tetraploid) 2203.209
CNS0095615Golden flower (tetraploid) 332.425
CRA001975CRR073297Stem 188.762
CRR073298Stem 285.556
CRR073299Stem 3153.874
CRR073300Leaf 123.346
CRR073301Leaf 226.309
CRR073302Leaf 323.836
CRR073303Juvenile bud 116.498
CRR073304Juvenile bud 29.461
CRR073305Juvenile bud 318.720
CRR073306Third green 12.758
CRR073307Third green 22.471
CRR073308Third green 34.361
CRR073309Second white 15.878
CRR073310Second white 23.921
CRR073311Second white 33.094
CRR073312Silver flowering 11.587
CRR073313Silver flowering 22.152
CRR073314Silver flowering 31.852
CRR073315Gold flowering 1900.512
CRR073316Gold flowering 2826.710
CRR073317Gold flowering 3830.293
CRR073318Tawny withering 177.693
CRR073319Tawny withering 253.884
CRR073320Tawny withering 375.876