Detail information of GWHGAAZE018761


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006423893.11.40717E-68hypothetical protein CICLE_v10029102mg [Citrus clementina]
Swissprottr|Q9FMG4|SC35_ARATH4E-66Serine/arginine-rich splicing factor SC35
trEMBLtr|V4SEB9|V4SEB9_9ROSI5E-69Uncharacterized protein {ECO:0000313|EMBL:ESR37135.1}
TAIR10AT5G64200.27E-54ortholog of human splicing factor SC35

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2394436723946339+
GWHAAZE00000005mRNA2394436723946339+
GWHAAZE00000005exon2394436723944442+
GWHAAZE00000005exon2394452823944606+
GWHAAZE00000005exon2394512823945207+
GWHAAZE00000005exon2394593123945997+
GWHAAZE00000005exon2394626423946339+
GWHAAZE00000005CDS2394436723944442+
GWHAAZE00000005CDS2394452823944606+
GWHAAZE00000005CDS2394512823945207+
GWHAAZE00000005CDS2394593123945997+
GWHAAZE00000005CDS2394626423946339+
Transcript Sequence

Network for GWHGAAZE018761

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_119887.20E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12891SFRS2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf53.579
SRR3591706second leaf43.118
SRR3591707mature leaf64.929
SRR3591708Shoot apex55.321
SRR3591709Stem59.735
SRR3591710White floral bud46.315
SRR3591711White flower48.084
SRR3591712Green floral bud35.071
SRR3591713Yellow flower40.734
SRP173429 SRR8316895Juvenile bud stage 93.106
SRR8316896Juvenile bud stage 160.175
SRR8316897Juvenile bud stage 87.685
SRR8316894Third green stage 46.798
SRR8316900Third green stage 97.479
SRR8316901Third green stage 108.388
SRR8316898Complete white stage 42.944
SRR8316899Complete white stage 102.233
SRR8316903Complete white stage 81.828
SRR8316902Silver flowering stage57.219
SRR8316904Silver flowering stage61.754
SRR8316905Silver flowering stage40.314
SRR8316906Gold flowering stage 131.319
SRR8316907Gold flowering stage 124.215
SRR8316908Gold flowering stage 106.142
SRP132670SRR6706286Control140.857
SRR6706287Light intensity 50%136.919
SRR6706288Light intensity 20%134.084
CNP0000432CNS0095592Slightly white alabastrum(diploid) 152.717
CNS0095593Slightly white alabastrum(diploid) 256.739
CNS0095594Slightly white alabastrum(diploid) 357.487
CNS0095595Whole white alabastrum(diploid) 252.350
CNS0095596Whole white alabastrum(diploid) 331.779
CNS0095597Whole white alabastrum(diploid) 441.304
CNS0095598Silvery flower (diploied) 196.012
CNS0095599Silvery flower (diploied) 2107.927
CNS0095600Silvery flower (diploied) 393.870
CNS0095601Golden flower (diploid) 1153.262
CNS0095602Golden flower (diploid) 2101.077
CNS0095603Golden flower (diploid) 397.030
CNS0095604Slightly white alabastrum(tetraploid) 163.054
CNS0095605Slightly white alabastrum(tetraploid) 262.667
CNS0095606Slightly white alabastrum(tetraploid) 3133.016
CNS0095607Whole white alabastrum(tetraploid) 151.135
CNS0095608Whole white alabastrum(tetraploid) 224.289
CNS0095609Whole white alabastrum(tetraploid) 378.298
CNS0095610Silvery flower (tetraploid) 181.622
CNS0095611Silvery flower (tetraploid) 271.936
CNS0095612Silvery flower (tetraploid) 346.255
CNS0095613Golden flower (tetraploid) 150.622
CNS0095614Golden flower (tetraploid) 264.593
CNS0095615Golden flower (tetraploid) 337.170
CRA001975CRR073297Stem 194.499
CRR073298Stem 294.587
CRR073299Stem 336.777
CRR073300Leaf 1104.011
CRR073301Leaf 291.768
CRR073302Leaf 324.224
CRR073303Juvenile bud 128.125
CRR073304Juvenile bud 218.883
CRR073305Juvenile bud 334.970
CRR073306Third green 114.551
CRR073307Third green 223.772
CRR073308Third green 318.657
CRR073309Second white 122.140
CRR073310Second white 221.274
CRR073311Second white 320.298
CRR073312Silver flowering 117.941
CRR073313Silver flowering 228.082
CRR073314Silver flowering 324.510
CRR073315Gold flowering 125.266
CRR073316Gold flowering 234.582
CRR073317Gold flowering 321.981
CRR073318Tawny withering 144.178
CRR073319Tawny withering 234.542
CRR073320Tawny withering 338.005