Gene detail

Detail information of GWHGAAZE018719

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011092439.1	0	PREDICTED: serine/threonine-protein kinase PEPKR2-like [Sesamum indicum]
Swissprot	tr\|Q8W490\|PEPK2_ARATH	0	Serine/threonine-protein kinase PEPKR2
trEMBL	tr\|G3M0D5\|G3M0D5_HEVBR	0	Calcium-dependent protein kinase {ECO:0000313\|EMBL:AEO21918.1}
TAIR10	AT1G12680.1	2E-149	phosphoenolpyruvate carboxylase-related kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	23258742	23262397	-
GWHAAZE00000005	mRNA	23258742	23262397	-
GWHAAZE00000005	exon	23258742	23259088	-
GWHAAZE00000005	exon	23260652	23260948	-
GWHAAZE00000005	exon	23261656	23262397	-
GWHAAZE00000005	CDS	23261656	23262397	-
GWHAAZE00000005	CDS	23260652	23260948	-
GWHAAZE00000005	CDS	23258742	23259088	-

Transcript Sequence
>GWHTAAZE018741 ATGGAATTTTTGGGGAGGAAGAGAAAGGGAGTGGAGACTCTAGCCGCATGTCGAATTAACCCAACTCCATTAACAATCATTTGGTCACATTTGTCGCTGGAAGATTACTCTAGGCGTAAAAAGAAGTGCAAGGAAATAGTAGCAATTGAAACCGTTAGTTCTTGTAAAACTGTAGTCACCGGAGTTGTCACTGCCCCACCTTGTGGGGGCTCGTGCACAGATCTGCCCGGTAGAGGTCTTAAGAGGAAAATTGGGTGTATCGATGCAATGACTCGAATGGGTCGAAAGAAAAAGATCGAACTAGACTACGAGTTGGGTGAAGTTATCGGGAAAGGGAAATTTGGGTCTGTGGTACTGTGTCGGAATAAAGCTAGTGGTGAAGAATTTGCTTGCAAGACACTGCAGAAGGGGGAGGAAATTGTGCACCGGGAGGTGGAGATAATGCAGCACCTTTCTGGGCATCCGAGTGTGGTGACATTAAAGGCGGTTTATGAGGACACTCAATCTTTTCATCTTGTGATGGAGCTGTGTTCGGGGGGAAGGTTGCTTGATCAAATGGCTAAGGAAGGGCCGCTTTCGGAGCAAAGAGCTGCTAATTTACTGAAGGAACTGATGGTGGTTATCAAATATTGTCATGAAATGGGTGTTGTTCACCGTGATGTAAAGCCTGAGAATGTACTGCTTACGAACTCTGGAGGAATCAAGCTTGCGGATTTTGGATTGGCTGTTAGAATTGCAAATGGTCAAAGCGTGTCTGGTGTAGTTGGAAGTCCCGCCTATGTCGCCCCAGAAGTATTGGCTGGTGATTATTCAGGGAAAGTGGATATATGGAGTGCTGGTGTCCTCCTCCATGCGCTTTTGATTGGTTTGCTTCCTTTTCACGGTGATTCATTGGAAACCGTGTTCGAAGCTATCAAGAAGGTGAACCTCAATTTTAGTGGTGGGTTATGGGAATCCGTATCCCAACCTGCTCGTGATCTGATTACACATATGCTGGAAAGGGATGTTTCGGCTAGGTTCACCGCTGACGATGTACTGAGTCATCCGTGGATTTTATTTTACACTGAACCGACATTAGAGACAGTAACTCTGAGGCCAAAAGTAAAAGCCCATTTTAGGTTAACTTCACTGACTGCCACACCCGGGTTTGAATCCGAGAGGAACAAGTTTATAAGCAGTAGCAGTTCTCTCAGTGACGACTCTAGTCCAGGTTCGTCCAATAACCTCAAAGATGAAGACTGTGGATTGGTTGACGTTCTTGCTGTGGCTATTTCAAGGGTGAGGATATCAGAGCCAAAGAGAAGCCGATTATGCAGTCCAAACACCCCAGTCCAACAGAAATGTTCCTCTAACATTAAAGTTAACAGCCTCTGTACAGCATTTTAG

Network for GWHGAAZE018719

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	103	351	1.20E-69

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.954
	SRR3591706	second leaf	18.074
	SRR3591707	mature leaf	26.859
	SRR3591708	Shoot apex	36.392
	SRR3591709	Stem	40.500
	SRR3591710	White floral bud	23.642
	SRR3591711	White flower	26.110
	SRR3591712	Green floral bud	23.958
	SRR3591713	Yellow flower	14.236
SRP173429	SRR8316895	Juvenile bud stage	17.388
	SRR8316896	Juvenile bud stage	18.654
	SRR8316897	Juvenile bud stage	5.480
	SRR8316894	Third green stage	7.341
	SRR8316900	Third green stage	18.347
	SRR8316901	Third green stage	17.643
	SRR8316898	Complete white stage	5.121
	SRR8316899	Complete white stage	31.107
	SRR8316903	Complete white stage	12.691
	SRR8316902	Silver flowering stage	7.391
	SRR8316904	Silver flowering stage	8.041
	SRR8316905	Silver flowering stage	4.165
	SRR8316906	Gold flowering stage	9.689
	SRR8316907	Gold flowering stage	16.393
	SRR8316908	Gold flowering stage	13.668
SRP132670	SRR6706286	Control	22.393
	SRR6706287	Light intensity 50%	23.091
	SRR6706288	Light intensity 20%	25.097
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.060
	CNS0095593	Slightly white alabastrum(diploid) 2	16.596
	CNS0095594	Slightly white alabastrum(diploid) 3	14.803
	CNS0095595	Whole white alabastrum(diploid) 2	12.467
	CNS0095596	Whole white alabastrum(diploid) 3	12.349
	CNS0095597	Whole white alabastrum(diploid) 4	12.480
	CNS0095598	Silvery flower (diploied) 1	18.949
	CNS0095599	Silvery flower (diploied) 2	11.643
	CNS0095600	Silvery flower (diploied) 3	19.690
	CNS0095601	Golden flower (diploid) 1	26.325
	CNS0095602	Golden flower (diploid) 2	26.542
	CNS0095603	Golden flower (diploid) 3	25.548
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.135
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.329
	CNS0095606	Slightly white alabastrum(tetraploid) 3	45.945
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.339
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.308
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.080
	CNS0095610	Silvery flower (tetraploid) 1	19.886
	CNS0095611	Silvery flower (tetraploid) 2	25.482
	CNS0095612	Silvery flower (tetraploid) 3	14.032
	CNS0095613	Golden flower (tetraploid) 1	13.376
	CNS0095614	Golden flower (tetraploid) 2	17.999
	CNS0095615	Golden flower (tetraploid) 3	13.489
CRA001975	CRR073297	Stem 1	52.370
	CRR073298	Stem 2	48.022
	CRR073299	Stem 3	56.077
	CRR073300	Leaf 1	35.255
	CRR073301	Leaf 2	35.736
	CRR073302	Leaf 3	34.598
	CRR073303	Juvenile bud 1	27.746
	CRR073304	Juvenile bud 2	17.147
	CRR073305	Juvenile bud 3	22.179
	CRR073306	Third green 1	8.089
	CRR073307	Third green 2	8.184
	CRR073308	Third green 3	9.089
	CRR073309	Second white 1	6.153
	CRR073310	Second white 2	8.477
	CRR073311	Second white 3	3.785
	CRR073312	Silver flowering 1	2.428
	CRR073313	Silver flowering 2	1.915
	CRR073314	Silver flowering 3	2.461
	CRR073315	Gold flowering 1	23.675
	CRR073316	Gold flowering 2	30.871
	CRR073317	Gold flowering 3	20.022
	CRR073318	Tawny withering 1	33.048
	CRR073319	Tawny withering 2	28.290
	CRR073320	Tawny withering 3	24.905