Gene detail

Detail information of GWHGAAZE018693

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008237242.1	5.07187E-87	PREDICTED: GATA transcription factor 24-like isoform X2 [Prunus mume]
Swissprot	tr\|Q8GXL7\|GAT24_ARATH	5E-58	GATA transcription factor 24
trEMBL	tr\|M5VYD7\|M5VYD7_PRUPE	1E-86	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01968.1}
TAIR10	AT3G21175.2	1E-41	ZIM-like 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22949805	22963044	+
GWHAAZE00000005	mRNA	22949805	22963044	+
GWHAAZE00000005	exon	22949805	22949943	+
GWHAAZE00000005	exon	22950158	22950330	+
GWHAAZE00000005	exon	22955245	22955331	+
GWHAAZE00000005	exon	22955682	22955815	+
GWHAAZE00000005	exon	22958034	22958135	+
GWHAAZE00000005	exon	22958751	22958856	+
GWHAAZE00000005	exon	22959898	22959957	+
GWHAAZE00000005	exon	22961060	22961128	+
GWHAAZE00000005	exon	22962903	22963044	+
GWHAAZE00000005	five_prime_UTR	22949805	22949943	+
GWHAAZE00000005	five_prime_UTR	22950158	22950189	+
GWHAAZE00000005	CDS	22950190	22950330	+
GWHAAZE00000005	CDS	22955245	22955331	+
GWHAAZE00000005	CDS	22955682	22955815	+
GWHAAZE00000005	CDS	22958034	22958135	+
GWHAAZE00000005	CDS	22958751	22958856	+
GWHAAZE00000005	CDS	22959898	22959957	+
GWHAAZE00000005	CDS	22961060	22961128	+
GWHAAZE00000005	CDS	22962903	22962935	+
GWHAAZE00000005	three_prime_UTR	22962936	22963044	+

Transcript Sequence
>GWHTAAZE018715 CTTACAAATTTAGGTTTGTATTTGAACAAAAAAATAGTGACTGAGTAACGTCTTTGCACTTGCAGAAAGGATGGAATTAGGGCTCGGCTTCCAATTTCAGTTACATTAGAGAAAGAGAAATGCAGATGGAGTTGGAGAGTGCCACTGCAAACTAGGGTTTATGCAGATTGCATGCACGTCCCGATTGGAGTTGATGATCAAGTGGTGAGGAATGGGAGTAAGTTGAGAACTATTTTGCCATCTCGTACGGGTGACCTTACCATTTCGTTCGAGGGCCAAGTTCATGTCTTCCCCGCTGTTGCTCCCGAGAAGGTCCGGGCAGTGCTATTACTTTTGGGAGGGTGTGAAATACCTCGCAGCATATCTACCTCAGCATTTTTCCTGCAAGACAGTAACAAGAATATAGGTGATGTTTCCAAGCACTTGGATCTTTCTCCAAGAACTGCTTCCCTGGTTCGATTCCGCAGGAAAAAGAAAGAGAGATGTTTTGAGAAGAAAATTCGATACTCTTGCCGAAAAGAGCTTGCTCAGAGGATGCATCGTAAAAAGGGACAATTTATATCATCAAAGGAATATTACAAAACAGCTGATGGTAACTCTGATTCTGGTGATGGCACTTCTCAGCCAGAACATGTTTGTCAACATTGTGGAGTTGGTGAGAAGTCTACTCCAGCAATGCGGCGGGGGCCTGCAGGTCCAAAAACACTTTGTAATGCTTGTGGGCTTGTGTGGGCAAACAAGGGAACTTTGAGAGATCTTACAAAGCGAGGAAGAATTACCAGTTTTGACCAAAGTGATAGGGAAACGCTGGAAGATCTAGTGAATGCATCTGGAACGGAATTTGAGATTCCTATGAGTTTTGATGAACAGGTAGACATTGATTCGCACATGGGTACTAACTAGCCAGGGGTTTAAGGAAGTCACCTGCTCATCATCACAAATAGGGTTTGTAGTCGTACCTGTTCTTCCTGGTCACCGAGACTTTATTTTATGTTTATTTTTTTTTTGTATG

Network for GWHGAAZE018693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06200.15	tify	27	56	1.10E-09
PF06203.15	CCT	90	132	1.50E-14
PF00320.28	GATA	156	192	5.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2C2-GATA

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0008270	molecular_function	zinc ion binding
GO:0043565	molecular_function	sequence-specific DNA binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.581
	SRR3591706	second leaf	1.162
	SRR3591707	mature leaf	0.986
	SRR3591708	Shoot apex	1.339
	SRR3591709	Stem	0.648
	SRR3591710	White floral bud	5.081
	SRR3591711	White flower	4.563
	SRR3591712	Green floral bud	5.761
	SRR3591713	Yellow flower	4.854
SRP173429	SRR8316895	Juvenile bud stage	3.321
	SRR8316896	Juvenile bud stage	5.989
	SRR8316897	Juvenile bud stage	3.414
	SRR8316894	Third green stage	1.509
	SRR8316900	Third green stage	4.057
	SRR8316901	Third green stage	3.525
	SRR8316898	Complete white stage	1.136
	SRR8316899	Complete white stage	4.375
	SRR8316903	Complete white stage	2.737
	SRR8316902	Silver flowering stage	1.308
	SRR8316904	Silver flowering stage	0.935
	SRR8316905	Silver flowering stage	0.191
	SRR8316906	Gold flowering stage	0.351
	SRR8316907	Gold flowering stage	1.128
	SRR8316908	Gold flowering stage	0.953
SRP132670	SRR6706286	Control	7.281
	SRR6706287	Light intensity 50%	6.359
	SRR6706288	Light intensity 20%	5.510
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.856
	CNS0095593	Slightly white alabastrum(diploid) 2	6.754
	CNS0095594	Slightly white alabastrum(diploid) 3	9.857
	CNS0095595	Whole white alabastrum(diploid) 2	5.150
	CNS0095596	Whole white alabastrum(diploid) 3	8.096
	CNS0095597	Whole white alabastrum(diploid) 4	5.604
	CNS0095598	Silvery flower (diploied) 1	8.434
	CNS0095599	Silvery flower (diploied) 2	5.434
	CNS0095600	Silvery flower (diploied) 3	1.518
	CNS0095601	Golden flower (diploid) 1	8.734
	CNS0095602	Golden flower (diploid) 2	2.034
	CNS0095603	Golden flower (diploid) 3	2.202
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.372
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.392
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.665
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.732
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.644
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.315
	CNS0095610	Silvery flower (tetraploid) 1	1.694
	CNS0095611	Silvery flower (tetraploid) 2	1.223
	CNS0095612	Silvery flower (tetraploid) 3	1.238
	CNS0095613	Golden flower (tetraploid) 1	1.608
	CNS0095614	Golden flower (tetraploid) 2	1.357
	CNS0095615	Golden flower (tetraploid) 3	0.974
CRA001975	CRR073297	Stem 1	3.455
	CRR073298	Stem 2	3.533
	CRR073299	Stem 3	1.953
	CRR073300	Leaf 1	4.707
	CRR073301	Leaf 2	4.166
	CRR073302	Leaf 3	0.426
	CRR073303	Juvenile bud 1	1.160
	CRR073304	Juvenile bud 2	0.372
	CRR073305	Juvenile bud 3	0.910
	CRR073306	Third green 1	0.157
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.022
	CRR073311	Second white 3	0.003
	CRR073312	Silver flowering 1	0.046
	CRR073313	Silver flowering 2	0.043
	CRR073314	Silver flowering 3	0.021
	CRR073315	Gold flowering 1	0.344
	CRR073316	Gold flowering 2	0.810
	CRR073317	Gold flowering 3	0.502
	CRR073318	Tawny withering 1	0.214
	CRR073319	Tawny withering 2	0.691
	CRR073320	Tawny withering 3	0.164