Gene detail

Detail information of GWHGAAZE018690

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006364377.1	0	PREDICTED: probable arabinose 5-phosphate isomerase-like [Solanum tuberosum]
Swissprot	tr\|Q9M1T1\|SETH3_ARATH	0	Probable arabinose 5-phosphate isomerase
trEMBL	tr\|M1D2D5\|M1D2D5_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400079746}
TAIR10	AT3G54690.1	2E-145	Sugar isomerase (SIS) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22932349	22935312	+
GWHAAZE00000005	mRNA	22932349	22935312	+
GWHAAZE00000005	exon	22932349	22932993	+
GWHAAZE00000005	exon	22934484	22934707	+
GWHAAZE00000005	exon	22935156	22935312	+
GWHAAZE00000005	CDS	22932349	22932993	+
GWHAAZE00000005	CDS	22934484	22934707	+
GWHAAZE00000005	CDS	22935156	22935312	+

Transcript Sequence
>GWHTAAZE018712 ATGGGGTCTCTCCCTCCACCGTCATCAGATCTCTCCCTTCCCTCAAAACAAACTTTAATTGAACCCACAGACCTCCTCCACCTCTTCAAATCCCAGCAAAAATACCTCAACCACTTCTTCCAGAACCTAAACCTCTCCCAAACCCTAACCTTCACCCACACTCTATTGAATTGCAAGGGCACAATCTTCTTCACCGGAGTCGGAAAATCCGGCTTCGTATCCCAAAAGATCTCCCAAACCCTAATCTCCCTCGGGATCCGAGCCGGATTCCTCTCTCCGGTCGACGCTCTCCACGGAGACATTGGAATTTTGTCGGATCTGGATATTGTGGTTTTGTTCAGTAAAAGTGGGAATACGGAGGAGTTGTTGAGGTTAGTGCCTTGCGCGAAGGCCAAAGGGGCGTATTTGATCTCGGTTACTTCGGTGGAGAGCAATGTGTTGATGGATTTGTGTGATATGAATGTGTATTTGCCCCTTGAGAGAGAGTTATGTCCCTTTAATTTGGCTCCGGTTACCTCGACAGCGATTCAGATGGTTTTCGGGGATACGGTGGCGATTGCGTTGATGGAGGCGAGGAATTTGAGTAGGAACGAGTATGCTGCTAATCATCCTGCTGGAAGGATTGGGAAGAGCTTGATTTTCAAGGTTAAGGATGTAATGAAGAAGCAGGAGGAACTTCCAGTATGCAGGGAAGGGGATTTAATAATGGATCAGCTAGTAGAGCTAACCAGTAAAGGGTGTGGCTGTCTCCTCGTTATTGATGACGAGTACCATCTCATTGGCACATTTACTGATGGTGATTTGCGGCGCACACTGAAAGCTAGTGGGGAAGGGATCTTCAAGTTGACTGTGGGAGAGATGTGCAACAGGAAGCCAAGGACAATAGAAGTGGATGCAATGGCGGCCGAGGCAATGCAAAAGATGGAGTCTCCACCATCTCCGGTTCAGTTCTTGCCAGTCATCAATCAGCAGAATGTATTGATTGGTATTGTTACTCTACATGGGTTGGTATCAGCTGGCTTGTGA

Network for GWHGAAZE018690

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01380.23	SIS	56	186	3.20E-18
PF00571.29	CBS	216	273	0.00021
PF00571.29	CBS	284	339	6.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06041	kdsD, kpsF	Metabolic pathways	map01100
K06041	kdsD, kpsF	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:1901135	biological_process	carbohydrate derivative metabolic process
GO:0016853	molecular_function	isomerase activity
GO:0097367	molecular_function	carbohydrate derivative binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	152.695
	SRR3591706	second leaf	161.671
	SRR3591707	mature leaf	79.149
	SRR3591708	Shoot apex	83.171
	SRR3591709	Stem	46.248
	SRR3591710	White floral bud	123.244
	SRR3591711	White flower	32.986
	SRR3591712	Green floral bud	175.228
	SRR3591713	Yellow flower	26.039
SRP173429	SRR8316895	Juvenile bud stage	52.975
	SRR8316896	Juvenile bud stage	72.903
	SRR8316897	Juvenile bud stage	37.737
	SRR8316894	Third green stage	27.757
	SRR8316900	Third green stage	104.504
	SRR8316901	Third green stage	113.485
	SRR8316898	Complete white stage	23.337
	SRR8316899	Complete white stage	151.373
	SRR8316903	Complete white stage	28.406
	SRR8316902	Silver flowering stage	9.896
	SRR8316904	Silver flowering stage	13.337
	SRR8316905	Silver flowering stage	7.694
	SRR8316906	Gold flowering stage	19.001
	SRR8316907	Gold flowering stage	15.926
	SRR8316908	Gold flowering stage	16.787
SRP132670	SRR6706286	Control	108.078
	SRR6706287	Light intensity 50%	118.706
	SRR6706288	Light intensity 20%	125.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.380
	CNS0095593	Slightly white alabastrum(diploid) 2	112.990
	CNS0095594	Slightly white alabastrum(diploid) 3	84.226
	CNS0095595	Whole white alabastrum(diploid) 2	132.982
	CNS0095596	Whole white alabastrum(diploid) 3	126.127
	CNS0095597	Whole white alabastrum(diploid) 4	158.496
	CNS0095598	Silvery flower (diploied) 1	46.220
	CNS0095599	Silvery flower (diploied) 2	53.810
	CNS0095600	Silvery flower (diploied) 3	29.029
	CNS0095601	Golden flower (diploid) 1	58.751
	CNS0095602	Golden flower (diploid) 2	36.381
	CNS0095603	Golden flower (diploid) 3	37.443
	CNS0095604	Slightly white alabastrum(tetraploid) 1	88.623
	CNS0095605	Slightly white alabastrum(tetraploid) 2	100.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	73.003
	CNS0095607	Whole white alabastrum(tetraploid) 1	142.470
	CNS0095608	Whole white alabastrum(tetraploid) 2	157.912
	CNS0095609	Whole white alabastrum(tetraploid) 3	99.664
	CNS0095610	Silvery flower (tetraploid) 1	14.487
	CNS0095611	Silvery flower (tetraploid) 2	13.917
	CNS0095612	Silvery flower (tetraploid) 3	14.977
	CNS0095613	Golden flower (tetraploid) 1	11.077
	CNS0095614	Golden flower (tetraploid) 2	9.567
	CNS0095615	Golden flower (tetraploid) 3	8.685
CRA001975	CRR073297	Stem 1	80.782
	CRR073298	Stem 2	83.971
	CRR073299	Stem 3	82.217
	CRR073300	Leaf 1	129.604
	CRR073301	Leaf 2	127.504
	CRR073302	Leaf 3	93.370
	CRR073303	Juvenile bud 1	118.827
	CRR073304	Juvenile bud 2	98.435
	CRR073305	Juvenile bud 3	122.625
	CRR073306	Third green 1	23.316
	CRR073307	Third green 2	32.434
	CRR073308	Third green 3	22.105
	CRR073309	Second white 1	16.851
	CRR073310	Second white 2	9.591
	CRR073311	Second white 3	9.415
	CRR073312	Silver flowering 1	15.428
	CRR073313	Silver flowering 2	18.593
	CRR073314	Silver flowering 3	17.935
	CRR073315	Gold flowering 1	75.421
	CRR073316	Gold flowering 2	81.349
	CRR073317	Gold flowering 3	72.103
	CRR073318	Tawny withering 1	83.113
	CRR073319	Tawny withering 2	54.117
	CRR073320	Tawny withering 3	83.671