Detail information of GWHGAAZE018688


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI22388.31.36915E-26unnamed protein product [Vitis vinifera]
Swissprottr|P92948|CDC5L_ARATH7E-27Cell division cycle 5-like protein
trEMBLtr|F6H621|F6H621_VITVI4E-27Putative uncharacterized protein {ECO:0000313|EMBL:CCB47660.1}
TAIR10AT1G09770.14E-23cell division cycle 5

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2291945522920264+
GWHAAZE00000005mRNA2291945522920264+
GWHAAZE00000005exon2291945522919860+
GWHAAZE00000005exon2292016222920264+
GWHAAZE00000005five_prime_UTR2291945522919714+
GWHAAZE00000005CDS2291971522919860+
GWHAAZE00000005CDS2292016222920174+
GWHAAZE00000005three_prime_UTR2292017522920264+
Transcript Sequence

Network for GWHGAAZE018688

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0183Transcription factor MYB-related family Transcription factor MYB-related
map03040 Spliceosome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding8509.70E-13
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
K12860CDC5L, CDC5, CEF1 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.470
SRR3591706second leaf11.311
SRR3591707mature leaf10.521
SRR3591708Shoot apex14.717
SRR3591709Stem14.629
SRR3591710White floral bud13.789
SRR3591711White flower18.666
SRR3591712Green floral bud12.849
SRR3591713Yellow flower13.489
SRP173429 SRR8316895Juvenile bud stage 11.318
SRR8316896Juvenile bud stage 14.035
SRR8316897Juvenile bud stage 8.490
SRR8316894Third green stage 7.201
SRR8316900Third green stage 14.348
SRR8316901Third green stage 15.262
SRR8316898Complete white stage 7.375
SRR8316899Complete white stage 18.834
SRR8316903Complete white stage 17.137
SRR8316902Silver flowering stage7.177
SRR8316904Silver flowering stage16.748
SRR8316905Silver flowering stage9.429
SRR8316906Gold flowering stage 23.855
SRR8316907Gold flowering stage 20.562
SRR8316908Gold flowering stage 20.733
SRP132670SRR6706286Control51.591
SRR6706287Light intensity 50%49.865
SRR6706288Light intensity 20%45.250
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.241
CNS0095593Slightly white alabastrum(diploid) 210.854
CNS0095594Slightly white alabastrum(diploid) 311.117
CNS0095595Whole white alabastrum(diploid) 27.021
CNS0095596Whole white alabastrum(diploid) 35.146
CNS0095597Whole white alabastrum(diploid) 48.140
CNS0095598Silvery flower (diploied) 115.250
CNS0095599Silvery flower (diploied) 211.592
CNS0095600Silvery flower (diploied) 326.929
CNS0095601Golden flower (diploid) 17.579
CNS0095602Golden flower (diploid) 229.005
CNS0095603Golden flower (diploid) 333.065
CNS0095604Slightly white alabastrum(tetraploid) 15.864
CNS0095605Slightly white alabastrum(tetraploid) 28.078
CNS0095606Slightly white alabastrum(tetraploid) 326.270
CNS0095607Whole white alabastrum(tetraploid) 14.306
CNS0095608Whole white alabastrum(tetraploid) 24.275
CNS0095609Whole white alabastrum(tetraploid) 321.581
CNS0095610Silvery flower (tetraploid) 132.420
CNS0095611Silvery flower (tetraploid) 232.108
CNS0095612Silvery flower (tetraploid) 318.679
CNS0095613Golden flower (tetraploid) 18.114
CNS0095614Golden flower (tetraploid) 226.186
CNS0095615Golden flower (tetraploid) 322.798
CRA001975CRR073297Stem 115.800
CRR073298Stem 218.558
CRR073299Stem 315.421
CRR073300Leaf 116.576
CRR073301Leaf 212.645
CRR073302Leaf 310.158
CRR073303Juvenile bud 111.335
CRR073304Juvenile bud 210.249
CRR073305Juvenile bud 325.068
CRR073306Third green 19.502
CRR073307Third green 25.042
CRR073308Third green 38.081
CRR073309Second white 15.320
CRR073310Second white 28.508
CRR073311Second white 311.417
CRR073312Silver flowering 18.074
CRR073313Silver flowering 29.964
CRR073314Silver flowering 37.558
CRR073315Gold flowering 16.231
CRR073316Gold flowering 28.878
CRR073317Gold flowering 38.028
CRR073318Tawny withering 16.670
CRR073319Tawny withering 24.607
CRR073320Tawny withering 37.921