Gene detail

Detail information of GWHGAAZE018679

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008363634.1	2.93484E-44	PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Malus domestica]
Swissprot	tr\|Q9LXA5\|LRK91_ARATH	2E-39	L-type lectin-domain containing receptor kinase IX.1 (Precursor)
trEMBL	tr\|F6HW44\|F6HW44_VITVI	2E-43	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58908.1}
TAIR10	AT5G10530.1	3E-34	Concanavalin A-like lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22805006	22805320	-
GWHAAZE00000005	mRNA	22805006	22805320	-
GWHAAZE00000005	exon	22805006	22805320	-
GWHAAZE00000005	CDS	22805006	22805320	-

Transcript Sequence
>GWHTAAZE018701 TCGTCTGGATTGCTCTATCTGCACGAAGAATGGGAGCAATGCGTGTTACATAGAGACATCAAGTCGAGTAACGTGTTGGACTCGAACTTCAATGCCAAGCTAGGAGATTTTGGGATGGCTAGACTTGTGGACCACGAAAAAGAATCCCAAATGACGGAATTGGCGGGGACCATGGAGTGCATGGCCCCAAAGTGTGTCATTTCAGGCAAGGCCAGTAAAGAATTAGATGTCTACAGCTTTAGAATAGTATCGCTCAAAATAGCTAGTGGGAGAAGAGCTATTGAGTTTAGGACACAAAAAAGTGGTAATGAGTGA

Network for GWHGAAZE018679

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	2	95	4.90E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_L-LEC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	3.863
	SRR3591711	White flower	0.376
	SRR3591712	Green floral bud	0.768
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.423
	SRR8316896	Juvenile bud stage	0.756
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.101
	SRR8316900	Third green stage	0.514
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.084
	SRR8316899	Complete white stage	0.777
	SRR8316903	Complete white stage	0.112
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.021
	SRR8316905	Silver flowering stage	0.269
	SRR8316906	Gold flowering stage	0.550
	SRR8316907	Gold flowering stage	0.274
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.632
	SRR6706287	Light intensity 50%	0.920
	SRR6706288	Light intensity 20%	1.004
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.832
	CNS0095593	Slightly white alabastrum(diploid) 2	0.004
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.418
	CNS0095596	Whole white alabastrum(diploid) 3	0.019
	CNS0095597	Whole white alabastrum(diploid) 4	0.738
	CNS0095598	Silvery flower (diploied) 1	1.091
	CNS0095599	Silvery flower (diploied) 2	0.933
	CNS0095600	Silvery flower (diploied) 3	0.543
	CNS0095601	Golden flower (diploid) 1	1.736
	CNS0095602	Golden flower (diploid) 2	0.511
	CNS0095603	Golden flower (diploid) 3	0.850
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.198
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.470
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.927
	CNS0095612	Silvery flower (tetraploid) 3	1.076
	CNS0095613	Golden flower (tetraploid) 1	0.155
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.210
CRA001975	CRR073297	Stem 1	0.777
	CRR073298	Stem 2	0.212
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	1.159
	CRR073301	Leaf 2	1.136
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.555
	CRR073304	Juvenile bud 2	0.146
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.136
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.443
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.416
	CRR073311	Second white 3	0.118
	CRR073312	Silver flowering 1	0.392
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.360
	CRR073315	Gold flowering 1	0.375
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.120
	CRR073320	Tawny withering 3	0.168