Gene detail

Detail information of GWHGAAZE018662

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011002833.1	7.8841E-175	PREDICTED: soluble inorganic pyrophosphatase 1, chloroplastic-like [Populus euphratica]
Swissprot	tr\|Q9LXC9\|IPYR1_ARATH	2E-156	Soluble inorganic pyrophosphatase 1, chloroplastic (Precursor)
trEMBL	tr\|B9HN61\|B9HN61_POPTR	5E-173	Uncharacterized protein {ECO:0000313\|EMBL:EEE87162.2}
TAIR10	AT5G09650.1	3E-123	pyrophosphorylase 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22431942	22437191	+
GWHAAZE00000005	mRNA	22431942	22437191	+
GWHAAZE00000005	exon	22431942	22432193	+
GWHAAZE00000005	exon	22433258	22433418	+
GWHAAZE00000005	exon	22434101	22434201	+
GWHAAZE00000005	exon	22434276	22434457	+
GWHAAZE00000005	exon	22435837	22435935	+
GWHAAZE00000005	exon	22437099	22437191	+
GWHAAZE00000005	CDS	22431942	22432193	+
GWHAAZE00000005	CDS	22433258	22433418	+
GWHAAZE00000005	CDS	22434101	22434201	+
GWHAAZE00000005	CDS	22434276	22434457	+
GWHAAZE00000005	CDS	22435837	22435935	+
GWHAAZE00000005	CDS	22437099	22437191	+

Transcript Sequence
>GWHTAAZE018684 ATGGCCGCCGCCGCCAGAGTGATGATGGTATCATCAGCAAGCAACGTTACCACCACCTCCTCCTTACTCTTCAAATCTCCATTCCTGAAACCTCACACTCTAACCCCTTCTTTCAACAACAGATTATTACTCTCCAAGAAGAGATTCTTCAATTGCAGAGCCCTTTACAAGCCCTCTATTCAAACTAAAGAGGAAGGCCTCCCCGAAACCCTAGATTATCGTGTCTTCTTCCTCGACAACTCTGGCAAAAAGGTTTCCCCTTGGCATGATATACCATTGCACTTGGGTGATGGTGTCTTCAGCTTTATTGTTGAAATTCCCAAAGAATCAAGTGCGAAGATGGAAGTTGCTACTGACGAGCCCTTCACTCCCATTAAACAGGATACAAAGAAAGGAAAACTTCGATACTATCCGTACAACATAAATTGGAATTACGGGTTGCTTCCACAAACATGGGAAGACCCATCATTAGCAAATCCTGAAGTTGACGGTGCACTTGGAGATAATGATCCAGTTGACGTTGTTGAAATTGGTGAAACTCGTGGAAAAATTGGACAAATTTTGAAGGTCAAGCCCCTAGGTGCTTTAGCTATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCAATTTCATTGGATGACCCAAAGGCTTCACTTGTTAACGATGTTGATGATGTTGAGAAGCATTTCCCGGGTACTCTCACTGCAATCAGAGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAACCTGCCAACAAGTTTGGTCTTGGCAACAAGGTGGCAAATAAGGATTATGCCCTTAAGGTGATCACCGAGACAAATGAGTCATGGGCCAAACTTGTAAAGAGATCTGTTCCTTCTGGAGAGCTTTCACTCCTGTAA

Network for GWHGAAZE018662

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00719.20	Pyrophosphatase	102	279	5.00E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01507	ppa	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0006796	biological_process	phosphate-containing compound metabolic process
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0004427	molecular_function	inorganic diphosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	59.515
	SRR3591706	second leaf	93.886
	SRR3591707	mature leaf	48.461
	SRR3591708	Shoot apex	76.587
	SRR3591709	Stem	44.754
	SRR3591710	White floral bud	16.939
	SRR3591711	White flower	15.369
	SRR3591712	Green floral bud	63.879
	SRR3591713	Yellow flower	14.181
SRP173429	SRR8316895	Juvenile bud stage	41.599
	SRR8316896	Juvenile bud stage	44.357
	SRR8316897	Juvenile bud stage	25.697
	SRR8316894	Third green stage	21.387
	SRR8316900	Third green stage	78.335
	SRR8316901	Third green stage	59.150
	SRR8316898	Complete white stage	6.740
	SRR8316899	Complete white stage	54.220
	SRR8316903	Complete white stage	10.617
	SRR8316902	Silver flowering stage	3.541
	SRR8316904	Silver flowering stage	5.730
	SRR8316905	Silver flowering stage	2.307
	SRR8316906	Gold flowering stage	10.323
	SRR8316907	Gold flowering stage	10.009
	SRR8316908	Gold flowering stage	24.188
SRP132670	SRR6706286	Control	37.758
	SRR6706287	Light intensity 50%	42.739
	SRR6706288	Light intensity 20%	48.658
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.806
	CNS0095593	Slightly white alabastrum(diploid) 2	51.341
	CNS0095594	Slightly white alabastrum(diploid) 3	39.718
	CNS0095595	Whole white alabastrum(diploid) 2	47.390
	CNS0095596	Whole white alabastrum(diploid) 3	44.552
	CNS0095597	Whole white alabastrum(diploid) 4	41.424
	CNS0095598	Silvery flower (diploied) 1	24.184
	CNS0095599	Silvery flower (diploied) 2	25.177
	CNS0095600	Silvery flower (diploied) 3	22.322
	CNS0095601	Golden flower (diploid) 1	21.075
	CNS0095602	Golden flower (diploid) 2	19.672
	CNS0095603	Golden flower (diploid) 3	19.767
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.359
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.718
	CNS0095606	Slightly white alabastrum(tetraploid) 3	60.704
	CNS0095607	Whole white alabastrum(tetraploid) 1	22.802
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.915
	CNS0095609	Whole white alabastrum(tetraploid) 3	56.159
	CNS0095610	Silvery flower (tetraploid) 1	36.527
	CNS0095611	Silvery flower (tetraploid) 2	50.392
	CNS0095612	Silvery flower (tetraploid) 3	33.698
	CNS0095613	Golden flower (tetraploid) 1	23.897
	CNS0095614	Golden flower (tetraploid) 2	32.386
	CNS0095615	Golden flower (tetraploid) 3	16.267
CRA001975	CRR073297	Stem 1	57.743
	CRR073298	Stem 2	51.148
	CRR073299	Stem 3	55.009
	CRR073300	Leaf 1	62.056
	CRR073301	Leaf 2	51.798
	CRR073302	Leaf 3	62.890
	CRR073303	Juvenile bud 1	79.266
	CRR073304	Juvenile bud 2	57.643
	CRR073305	Juvenile bud 3	69.974
	CRR073306	Third green 1	4.915
	CRR073307	Third green 2	1.977
	CRR073308	Third green 3	2.598
	CRR073309	Second white 1	12.057
	CRR073310	Second white 2	6.792
	CRR073311	Second white 3	7.924
	CRR073312	Silver flowering 1	7.856
	CRR073313	Silver flowering 2	9.333
	CRR073314	Silver flowering 3	7.124
	CRR073315	Gold flowering 1	119.696
	CRR073316	Gold flowering 2	165.394
	CRR073317	Gold flowering 3	138.382
	CRR073318	Tawny withering 1	47.786
	CRR073319	Tawny withering 2	47.784
	CRR073320	Tawny withering 3	60.440