Detail information of GWHGAAZE018654


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007018417.10Squalene monooxygenase isoform 1 [Theobroma cacao]
Swissprottr|O48651|ERG1_PANGI0Squalene monooxygenase
trEMBLtr|A0A061FG20|A0A061FG20_THECC0Squalene monooxygenase isoform 1 {ECO:0000313|EMBL:EOY15642.1}
TAIR10AT4G37760.10squalene epoxidase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2234511022349116-
GWHAAZE00000005mRNA2234511022349116-
GWHAAZE00000005exon2234889522349116-
GWHAAZE00000005exon2234756622347677-
GWHAAZE00000005exon2234724522347419-
GWHAAZE00000005exon2234674222346910-
GWHAAZE00000005exon2234610522346323-
GWHAAZE00000005exon2234571722345992-
GWHAAZE00000005exon2234533022345608-
GWHAAZE00000005exon2234511022345214-
GWHAAZE00000005CDS2234889522349116-
GWHAAZE00000005CDS2234756622347677-
GWHAAZE00000005CDS2234724522347419-
GWHAAZE00000005CDS2234674222346910-
GWHAAZE00000005CDS2234610522346323-
GWHAAZE00000005CDS2234571722345992-
GWHAAZE00000005CDS2234533022345608-
GWHAAZE00000005CDS2234511022345214-
Transcript Sequence

Network for GWHGAAZE018654

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08491.11SE2044711.70E-117
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00511SQLE, ERG1 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Steroid biosynthesismap00100
Sesquiterpenoid and triterpenoid biosynthesismap00909

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016021cellular_componentintegral component of membrane
GO:0004506molecular_functionsqualene monooxygenase activity
GO:0050660molecular_functionflavin adenine dinucleotide binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.793
SRR3591706second leaf316.585
SRR3591707mature leaf47.136
SRR3591708Shoot apex94.681
SRR3591709Stem14.002
SRR3591710White floral bud670.879
SRR3591711White flower204.255
SRR3591712Green floral bud221.720
SRR3591713Yellow flower111.457
SRP173429 SRR8316895Juvenile bud stage 31.020
SRR8316896Juvenile bud stage 48.236
SRR8316897Juvenile bud stage 38.811
SRR8316894Third green stage 28.947
SRR8316900Third green stage 215.253
SRR8316901Third green stage 183.769
SRR8316898Complete white stage 211.701
SRR8316899Complete white stage 308.726
SRR8316903Complete white stage 295.355
SRR8316902Silver flowering stage88.844
SRR8316904Silver flowering stage137.192
SRR8316905Silver flowering stage71.694
SRR8316906Gold flowering stage 122.612
SRR8316907Gold flowering stage 111.273
SRR8316908Gold flowering stage 124.919
SRP132670SRR6706286Control281.823
SRR6706287Light intensity 50%300.335
SRR6706288Light intensity 20%324.468
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.389
CNS0095593Slightly white alabastrum(diploid) 243.046
CNS0095594Slightly white alabastrum(diploid) 339.648
CNS0095595Whole white alabastrum(diploid) 250.077
CNS0095596Whole white alabastrum(diploid) 346.213
CNS0095597Whole white alabastrum(diploid) 472.642
CNS0095598Silvery flower (diploied) 185.117
CNS0095599Silvery flower (diploied) 236.535
CNS0095600Silvery flower (diploied) 3176.646
CNS0095601Golden flower (diploid) 146.291
CNS0095602Golden flower (diploid) 2106.659
CNS0095603Golden flower (diploid) 3100.601
CNS0095604Slightly white alabastrum(tetraploid) 143.488
CNS0095605Slightly white alabastrum(tetraploid) 233.636
CNS0095606Slightly white alabastrum(tetraploid) 392.999
CNS0095607Whole white alabastrum(tetraploid) 138.257
CNS0095608Whole white alabastrum(tetraploid) 242.916
CNS0095609Whole white alabastrum(tetraploid) 3148.331
CNS0095610Silvery flower (tetraploid) 1146.863
CNS0095611Silvery flower (tetraploid) 2199.186
CNS0095612Silvery flower (tetraploid) 3208.852
CNS0095613Golden flower (tetraploid) 176.059
CNS0095614Golden flower (tetraploid) 2129.359
CNS0095615Golden flower (tetraploid) 373.444
CRA001975CRR073297Stem 159.426
CRR073298Stem 248.243
CRR073299Stem 355.775
CRR073300Leaf 1150.545
CRR073301Leaf 2147.368
CRR073302Leaf 3159.483
CRR073303Juvenile bud 1258.770
CRR073304Juvenile bud 2212.473
CRR073305Juvenile bud 3265.355
CRR073306Third green 1162.077
CRR073307Third green 2120.116
CRR073308Third green 3142.708
CRR073309Second white 1150.914
CRR073310Second white 2106.625
CRR073311Second white 381.153
CRR073312Silver flowering 135.167
CRR073313Silver flowering 256.849
CRR073314Silver flowering 339.481
CRR073315Gold flowering 193.495
CRR073316Gold flowering 245.533
CRR073317Gold flowering 366.296
CRR073318Tawny withering 134.350
CRR073319Tawny withering 236.123
CRR073320Tawny withering 326.959