Gene detail

Detail information of GWHGAAZE018651

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007199841.1	0	hypothetical protein PRUPE_ppa005426mg [Prunus persica]
Swissprot	tr\|Q93ZN9\|DAPAT_ARATH	0	LL-diaminopimelate aminotransferase, chloroplastic (Precursor)
trEMBL	tr\|M5W2N6\|M5W2N6_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ01040.1}
TAIR10	AT4G33680.1	1E-171	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22307893	22314865	+
GWHAAZE00000005	mRNA	22307893	22314865	+
GWHAAZE00000005	exon	22307893	22307978	+
GWHAAZE00000005	exon	22308124	22308200	+
GWHAAZE00000005	exon	22308374	22308441	+
GWHAAZE00000005	exon	22309705	22309821	+
GWHAAZE00000005	exon	22310042	22310104	+
GWHAAZE00000005	exon	22310411	22310515	+
GWHAAZE00000005	exon	22310742	22310792	+
GWHAAZE00000005	exon	22311263	22311583	+
GWHAAZE00000005	exon	22312394	22312633	+
GWHAAZE00000005	exon	22313371	22313465	+
GWHAAZE00000005	exon	22313534	22313702	+
GWHAAZE00000005	exon	22314238	22314865	+
GWHAAZE00000005	CDS	22307893	22307978	+
GWHAAZE00000005	CDS	22308124	22308200	+
GWHAAZE00000005	CDS	22308374	22308441	+
GWHAAZE00000005	CDS	22309705	22309821	+
GWHAAZE00000005	CDS	22310042	22310104	+
GWHAAZE00000005	CDS	22310411	22310515	+
GWHAAZE00000005	CDS	22310742	22310792	+
GWHAAZE00000005	CDS	22311263	22311583	+
GWHAAZE00000005	CDS	22312394	22312633	+
GWHAAZE00000005	CDS	22313371	22313465	+
GWHAAZE00000005	CDS	22313534	22313702	+
GWHAAZE00000005	CDS	22314238	22314531	+
GWHAAZE00000005	three_prime_UTR	22314532	22314865	+

Transcript Sequence
>GWHTAAZE018673 ATGTCCCTGATTCAGCATCAACTTCTATCTACTTCAATTTCTTCTTCAAACTCGGCTTTTATAGCCAAAACAAACTTCAATTTAAGAACTCAGAATGTTTCTCTTCCGGCGAGGAACATTGGGATTTGTAAATGCGTTGCAACGCCTCAGACGGAGAAGACTGCTTACAAGACAAAGGTTTCTCGCAATGAAAACATGGGAAAACTTCAAGCTGGTTACCTCTTTCCAGAGGTTGCTAGAAGAAAGGCTGCACACATGTTGAAGTACCCAGACGCACAAGTGATAAGCCTTGGGATTGGTGACACTACAGAGCCAATTCCAGAAGTTATTACTTCTGCCATGGCAAAGAGATCACATGAACTATCCACACTAGAGGGTTACAGTGGTTATGGAGCTGAGCAAGGGGAAAAGCAACTGAGAGCTGCAATTGCCAGGACTTTTTATGCCAACCTTGACGTAGAGGAAGGTGATATATTTGTATCTGATGGTGCAAAATGCGACATATCTCGCCTTCAGGTTGTTTTTGGATCTAGTGTCACAATGGCGGTGCAAGACCCATCATACCCGGCTTATGTAGATTCAAGTGTCATTATGGGTCAGACTGGCCAGTTTCAGAAGGCTATTGAACAGTTTGCAAAAATTGAGTACATGAAGTGTACCCCAGAGAATGGTTTCTTTCCAGATTTATCTAATACCTCTCGTACGGACATCATATTTTTCTGTTCGCCTAACAATCCAACTGGTTCTGCTGCATCGAGAGAGCAACTGACCCGATTGGTACAGTTCGCCAAGGCCAATGGATCAATTATAGTATATGATTCTGCATATGCCTTGTATATGTCAGATGACAACCCACGGTCCATTTTTGAAATCCCTGGAGCCAAAGAGGTTGCAATTGAAACTTCTTCATTTTCCAAGTATGCTGGTTTCACTGGAGTTCGTTTAGGTTGGACTGTGATTCCAAAAGAGCTCCTATTTTCCGATGGATTTCCAGTGGCTAAGGACTTCAACCGTATAGTTTGCACTTGCTTCAATGGTGCATCCAACATTGCCCAAGCTGGTGGTCTGGCATGCCTTTCACCAGAAGGCCTCAAGGTTAGTTCCCTGGTCTCAGCTTCTTCATTGACGTTCAAAGCCAGGACACAGCGATTTAGTAAAATTGTAGGACCCAGAGAAGTGGCTGGTCACCACCCATGGAATCCAATGGTTGGCCAGCGGTCCCAATATCAAGGACCCTTGTTGAGAAATGGAGCCCCAGCTACCATTGAGAATGAAGAGGGTACCGTCCCGGTCCCCGTAGCTGTGATTATTGCCAGCTCAGCCTGTTGTAAAAGCCACTCGATGGTGTCTCCAACAGATTTGTTTGTTTTTGGTTGTGCGAGGTTTCAAGAGGCTATGCGGGATGTGATTGGTTTCTACAAAGAGAATACCGAGATTATAATGGATACTTTTAATTCGCTTGGTTTTAAAGTATATGGAGGGAAAAACGCTCCGTATGTGTGGGTCCACTTTCCTGGCCAAAGCTCGTGGGATGTTTTTGCTGAGATTCTTGAGAAGACGCATGTCGTTACCACGCCTGGCAGTGGTTTCGGACCTGGTGGTGAAGGTTTTGTAAGGGTGAGTGCCTTTGGTCATCGGAAGAATGTATTGGAAGCCTGCAGAAGATTCAAAGAGCTTTACAAGTGAAGCCCAGTAGTTTTGTATTCATGTTTTACGTTTCTCTGTCGCTGTAGGATCTTGGCCGAATTTCTAAAATTGTTTAGGCCTAGCTGGCTATATTGAGATGCTTCTGTTTATGTAAACGTTAGCATGATTTTTATCAGTTGTGAAAATTAGTTCTATCTCGGATTTGAATAAAATTGTGCTGAAAGCCTGGAGTGTTGTCAGAGTGCAGGAGCAGATGAAACATGGACTGCGCCATATGACGTGATGGACTGCCATTAAGTTGTGCATTGGAATTTTAAGAAACTGGTTAAATATGGAATAATTGAACAATGCCCCTTCCCCTTTACAAATCTGT

Network for GWHGAAZE018651

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00155.22	Aminotran_1_2	93	384	3.30E-24
PF00155.22	Aminotran_1_2	472	556	1.10E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10206	E2.6.1.83	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0008483	molecular_function	transaminase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	57.398
	SRR3591706	second leaf	57.530
	SRR3591707	mature leaf	28.010
	SRR3591708	Shoot apex	90.982
	SRR3591709	Stem	43.000
	SRR3591710	White floral bud	30.115
	SRR3591711	White flower	35.940
	SRR3591712	Green floral bud	78.963
	SRR3591713	Yellow flower	21.916
SRP173429	SRR8316895	Juvenile bud stage	48.080
	SRR8316896	Juvenile bud stage	61.679
	SRR8316897	Juvenile bud stage	31.129
	SRR8316894	Third green stage	24.950
	SRR8316900	Third green stage	93.932
	SRR8316901	Third green stage	77.726
	SRR8316898	Complete white stage	12.730
	SRR8316899	Complete white stage	82.823
	SRR8316903	Complete white stage	19.438
	SRR8316902	Silver flowering stage	10.115
	SRR8316904	Silver flowering stage	11.423
	SRR8316905	Silver flowering stage	5.319
	SRR8316906	Gold flowering stage	17.521
	SRR8316907	Gold flowering stage	17.487
	SRR8316908	Gold flowering stage	15.921
SRP132670	SRR6706286	Control	80.906
	SRR6706287	Light intensity 50%	83.034
	SRR6706288	Light intensity 20%	97.135
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.262
	CNS0095593	Slightly white alabastrum(diploid) 2	72.399
	CNS0095594	Slightly white alabastrum(diploid) 3	63.624
	CNS0095595	Whole white alabastrum(diploid) 2	58.777
	CNS0095596	Whole white alabastrum(diploid) 3	67.484
	CNS0095597	Whole white alabastrum(diploid) 4	42.607
	CNS0095598	Silvery flower (diploied) 1	42.578
	CNS0095599	Silvery flower (diploied) 2	41.161
	CNS0095600	Silvery flower (diploied) 3	41.245
	CNS0095601	Golden flower (diploid) 1	31.364
	CNS0095602	Golden flower (diploid) 2	38.560
	CNS0095603	Golden flower (diploid) 3	38.947
	CNS0095604	Slightly white alabastrum(tetraploid) 1	71.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	60.504
	CNS0095606	Slightly white alabastrum(tetraploid) 3	109.635
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.628
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	92.710
	CNS0095610	Silvery flower (tetraploid) 1	36.779
	CNS0095611	Silvery flower (tetraploid) 2	45.144
	CNS0095612	Silvery flower (tetraploid) 3	26.068
	CNS0095613	Golden flower (tetraploid) 1	13.834
	CNS0095614	Golden flower (tetraploid) 2	25.546
	CNS0095615	Golden flower (tetraploid) 3	5.514
CRA001975	CRR073297	Stem 1	76.158
	CRR073298	Stem 2	67.154
	CRR073299	Stem 3	79.491
	CRR073300	Leaf 1	76.010
	CRR073301	Leaf 2	74.343
	CRR073302	Leaf 3	89.455
	CRR073303	Juvenile bud 1	89.082
	CRR073304	Juvenile bud 2	66.407
	CRR073305	Juvenile bud 3	79.311
	CRR073306	Third green 1	5.276
	CRR073307	Third green 2	4.994
	CRR073308	Third green 3	7.296
	CRR073309	Second white 1	13.352
	CRR073310	Second white 2	10.645
	CRR073311	Second white 3	7.188
	CRR073312	Silver flowering 1	9.353
	CRR073313	Silver flowering 2	15.606
	CRR073314	Silver flowering 3	10.022
	CRR073315	Gold flowering 1	68.491
	CRR073316	Gold flowering 2	81.975
	CRR073317	Gold flowering 3	65.996
	CRR073318	Tawny withering 1	51.370
	CRR073319	Tawny withering 2	49.225
	CRR073320	Tawny withering 3	61.235