Gene detail

Detail information of GWHGAAZE018643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002271358.1	0	PREDICTED: aspartate--tRNA ligase, mitochondrial [Vitis vinifera]
Swissprot	tr\|Q6F2U9\|SYK_ORYSJ	4E-13	Lysine--tRNA ligase
trEMBL	tr\|D7T3N6\|D7T3N6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI25118.3}
TAIR10	AT4G33760.1	0	tRNA synthetase class II (D, K and N) family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	22229546	22237706	+
GWHAAZE00000005	mRNA	22229546	22237706	+
GWHAAZE00000005	exon	22229546	22229929	+
GWHAAZE00000005	exon	22230880	22231023	+
GWHAAZE00000005	exon	22231133	22231242	+
GWHAAZE00000005	exon	22231965	22232097	+
GWHAAZE00000005	exon	22232209	22232280	+
GWHAAZE00000005	exon	22232490	22232581	+
GWHAAZE00000005	exon	22232666	22232786	+
GWHAAZE00000005	exon	22233353	22233475	+
GWHAAZE00000005	exon	22233891	22234086	+
GWHAAZE00000005	exon	22234176	22234363	+
GWHAAZE00000005	exon	22234472	22234543	+
GWHAAZE00000005	exon	22236026	22236124	+
GWHAAZE00000005	exon	22236213	22236260	+
GWHAAZE00000005	exon	22236711	22236768	+
GWHAAZE00000005	exon	22237537	22237706	+
GWHAAZE00000005	CDS	22229546	22229929	+
GWHAAZE00000005	CDS	22230880	22231023	+
GWHAAZE00000005	CDS	22231133	22231242	+
GWHAAZE00000005	CDS	22231965	22232097	+
GWHAAZE00000005	CDS	22232209	22232280	+
GWHAAZE00000005	CDS	22232490	22232581	+
GWHAAZE00000005	CDS	22232666	22232786	+
GWHAAZE00000005	CDS	22233353	22233475	+
GWHAAZE00000005	CDS	22233891	22234086	+
GWHAAZE00000005	CDS	22234176	22234363	+
GWHAAZE00000005	CDS	22234472	22234543	+
GWHAAZE00000005	CDS	22236026	22236124	+
GWHAAZE00000005	CDS	22236213	22236260	+
GWHAAZE00000005	CDS	22236711	22236768	+
GWHAAZE00000005	CDS	22237537	22237706	+

Transcript Sequence
>GWHTAAZE018665 ATGTCCACCCTGTTCCTTCGAGCCCTACCCACCATAACTCTCCGCTCCAAAAACTTCCCTCTCCCTCTTCTTTGTTTTCACAAATTCATCATCAATAATCCCAAATTTCTTCTTCTCAACACAACTACTACTAGAACCAGAACTATCTCCTCTGTTTCTGTTTCTGCATCTACATCCGCTGAGACCCTGCTTCCTAATTGTAAGCAATCCTCAATACCCTTTAATGATGGCGCTCTTGAGTGGGTCACTAGAACTGGGTTCTGCGGCAATTTGTCAGAAAGTGATGTTGGTAAACGGGTTCAGCTTTGCGGGTGGGTCGCCCTTCATAGAATTCATGGTGCTGTTACTTTCCTCAATCTCAGGGACCATACTGGGATTGTTCAGGTTACAACACTCCCAAATGACTTCCCAGATGCTCATTCTATCGTGAATGACTTGAGACTCGAGTATGTGGTTGCTGTCGAAGGTGTTGTTCGTTCTCGGCCAAGTGAATCGGTCAATAAGAAAATGAAGACGGGCAAGTTCGAGGTTGCTGCTGAGCGGGTTCAAGTGTTGAATTCTGTGAGATCTAAGTTGCCATTCTTGGTTACTACTGGAGACGACGTAAAAGATTCTTTGAAAGAGGAAATTCGTTTGAGGTCTCAGATTGGTGTTATTAGGTACCGATGCCTTGATTTACGCCGGCCACAAATGACTTCCAATATATTGCTGCGACATAGAGTAGTGAAGCTCATCCGGAGGTACCTAGAGGATGAACATGGTTTCGTAGAGATTGAGACTCCAATACTGTCTAAATCCACTCCTGAAGGTGCTCGGGATTATTTGGTACCGTCAAGAGTTCAGCCAGGAATGTTCTATGCTTTGCCCCAAAGTCCACAGCTGTTTAAGCAAATGCTAATGGTTTCTGGTTTTGATAAGTACTATCAAATAGCAAGATGTTTTAGGGATGAAGATCTAAGGGCCGATAGACAACCTGAATTTACACAGTTGGATATGGAATTGGCTTTCACTCCTTTGGAGGAAATGCTGAAGCTCAATGAAGATTTAATAAGACAGGTTTTTCTAGAGATTAAAGGGGTCCAGCTACCAAATCCTTTCCCGAGGCTTACATATGCCGAAGCAATGAGTCGTTATGGTTCGGACAGGCCAGACATTCGCTTTGATCTTGAACTGAAAGATGTATCTGATGTTTTCTTAGATTCCCCCTTCAAGGTTTTTGCAGATACCTTGTCAAATGGGGGAATAATCAAGACAATATGTGTGCCATCAGGAGCAAAAGCTTATTCGAACACAAATCTTAAGAAAGGTGATATATACACTGAAGCGATCAAATCTGGAGCAAAGGGTTTGCCCTTCTTGAAGGTCTTGGATGATGGGAACATTGAAGGGATTCCTGCATTAGTATCATGTTTGGACCCCAGCAAAAAAGACGACCTTTTGAAAAAATGCTCGGCAGTAGCAGGTGATCTTATATTGTTTGCAGTCGGTGACCGTTCATCAGTTAATAAAACCCTAGACCGGCTGAGGCTGTATATAGCCCATCACTTGGGCTTGGTTGACCAGTCCAAGGATTCCATTTTATGGGTGACTGATTTTCCAATGTTTGAGTGGAATAGTTCAGAAAACAGACTTGAGGCCTTGCATCACCCTTTCACTGCCCCAAACCCCGATGACATGAATGACCTTTCGTCTGCCTGTGCTTTGGCTTATGACATGGTTTACAACGGAGTTGAGATTGGCGGAGGAAGTTTGAGAATTTACAAGCGTGAGGTTCAAGAAAAGGCTGAAGCTAAGTTTGGTTATCTTTTGGAAGCTTTCGACTTGGGTGCTCCGCCACATGGGGGGATAGCTTTCGGCTTGGATAGATTGGTGATGCTACTTGCTGGAGCTACTTCAATAAGGGATGTTATAGCTTTCCCAAAGACTACGACTGCCCAGTGCGCTCTCACTCATGCTCCTTCAGAGGTTGATTCCCAGCAGCTCAGAGATCTTTCTTTTAAGCCTCAATAG

Network for GWHGAAZE018643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	100	185	1.30E-11
PF00152.21	tRNA-synt_2	220	643	1.90E-98
PF02938.15	GAD	406	505	5.00E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01876	aspS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016874	molecular_function	ligase activity
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.406
	SRR3591706	second leaf	21.945
	SRR3591707	mature leaf	24.205
	SRR3591708	Shoot apex	19.148
	SRR3591709	Stem	13.317
	SRR3591710	White floral bud	15.018
	SRR3591711	White flower	22.349
	SRR3591712	Green floral bud	14.157
	SRR3591713	Yellow flower	22.051
SRP173429	SRR8316895	Juvenile bud stage	8.066
	SRR8316896	Juvenile bud stage	13.213
	SRR8316897	Juvenile bud stage	8.621
	SRR8316894	Third green stage	5.609
	SRR8316900	Third green stage	16.985
	SRR8316901	Third green stage	12.557
	SRR8316898	Complete white stage	4.434
	SRR8316899	Complete white stage	12.929
	SRR8316903	Complete white stage	9.239
	SRR8316902	Silver flowering stage	7.549
	SRR8316904	Silver flowering stage	10.001
	SRR8316905	Silver flowering stage	3.833
	SRR8316906	Gold flowering stage	18.669
	SRR8316907	Gold flowering stage	17.151
	SRR8316908	Gold flowering stage	18.972
SRP132670	SRR6706286	Control	8.779
	SRR6706287	Light intensity 50%	8.990
	SRR6706288	Light intensity 20%	10.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.784
	CNS0095593	Slightly white alabastrum(diploid) 2	7.871
	CNS0095594	Slightly white alabastrum(diploid) 3	8.462
	CNS0095595	Whole white alabastrum(diploid) 2	8.867
	CNS0095596	Whole white alabastrum(diploid) 3	8.495
	CNS0095597	Whole white alabastrum(diploid) 4	6.737
	CNS0095598	Silvery flower (diploied) 1	12.088
	CNS0095599	Silvery flower (diploied) 2	11.678
	CNS0095600	Silvery flower (diploied) 3	16.930
	CNS0095601	Golden flower (diploid) 1	9.657
	CNS0095602	Golden flower (diploid) 2	18.554
	CNS0095603	Golden flower (diploid) 3	16.958
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.787
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.577
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.851
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.707
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.191
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.880
	CNS0095610	Silvery flower (tetraploid) 1	19.301
	CNS0095611	Silvery flower (tetraploid) 2	20.941
	CNS0095612	Silvery flower (tetraploid) 3	20.494
	CNS0095613	Golden flower (tetraploid) 1	14.639
	CNS0095614	Golden flower (tetraploid) 2	16.308
	CNS0095615	Golden flower (tetraploid) 3	22.859
CRA001975	CRR073297	Stem 1	14.855
	CRR073298	Stem 2	12.534
	CRR073299	Stem 3	11.498
	CRR073300	Leaf 1	13.974
	CRR073301	Leaf 2	14.476
	CRR073302	Leaf 3	12.113
	CRR073303	Juvenile bud 1	12.162
	CRR073304	Juvenile bud 2	6.747
	CRR073305	Juvenile bud 3	10.925
	CRR073306	Third green 1	5.704
	CRR073307	Third green 2	4.621
	CRR073308	Third green 3	4.961
	CRR073309	Second white 1	11.364
	CRR073310	Second white 2	10.860
	CRR073311	Second white 3	15.150
	CRR073312	Silver flowering 1	16.995
	CRR073313	Silver flowering 2	16.268
	CRR073314	Silver flowering 3	14.538
	CRR073315	Gold flowering 1	12.439
	CRR073316	Gold flowering 2	21.214
	CRR073317	Gold flowering 3	14.348
	CRR073318	Tawny withering 1	9.622
	CRR073319	Tawny withering 2	9.385
	CRR073320	Tawny withering 3	12.202