Gene detail

Detail information of GWHGAAZE018629

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97288.1	6.4435E-114	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VWK4\|TRB1_ARATH	2E-88	Telomere repeat-binding factor 1
trEMBL	tr\|A0A068TPK3\|A0A068TPK3_COFCA	2E-114	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97288.1}
TAIR10	AT1G49950.3	5E-72	telomere repeat binding factor 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21972982	21977748	-
GWHAAZE00000005	mRNA	21972982	21977748	-
GWHAAZE00000005	exon	21972982	21973353	-
GWHAAZE00000005	exon	21973777	21973860	-
GWHAAZE00000005	exon	21974776	21974860	-
GWHAAZE00000005	exon	21975126	21975340	-
GWHAAZE00000005	exon	21977205	21977387	-
GWHAAZE00000005	exon	21977548	21977617	-
GWHAAZE00000005	exon	21977705	21977748	-
GWHAAZE00000005	CDS	21977705	21977748	-
GWHAAZE00000005	CDS	21977548	21977617	-
GWHAAZE00000005	CDS	21977205	21977387	-
GWHAAZE00000005	CDS	21975126	21975340	-
GWHAAZE00000005	CDS	21974776	21974860	-
GWHAAZE00000005	CDS	21973777	21973860	-
GWHAAZE00000005	CDS	21972982	21973353	-

Transcript Sequence
>GWHTAAZE018651 ATGGAGAAGGAATGGAGGAACAAAGAAGAACGCATGCTGGGAGGTTTACGTTTCTTCTCACTTTTGCAAAAGTTGCTACCTGATTTCGTCAGATGTAGCTGTACTCTAAAAGAACTTGCAGATTCTTGGTACATCTGTGCTTTCTTCATGGGTGCTCCAAAACAAAAATGGACGGCCGAAGAAGAAGCAGCTCTGAAAGCCGGAGTTATTAAGCATGGGGCTGGCAAGTGGCGTACAATTCTTAAAGATCCACAGTTTAGCAGTGTGTTGCAGCTGCGTTCAAATGTAGATCTCAAGGACAAGTGGAGGAACATGAGCGTAGTGGCAAATTGGGGATCACGTGAGAAGGCAAAGCTAGCACTGAAAAGAATGAAGCAAGTCCCTAAACAGGACGAGAGCTCTATGGCACTTGATAGTATTGTTGAAAGCGATGAAGAAATCATTGATGTTAAACCTCTTGCAGTTTCTAGAGGTTCTCCACAAACTGGTGGTCCAAAAAGATCTATCATAAGGTTGGACAATCTAATAATGGAGGCTATAAACAACTTGGAGGAGTCTGGTGGTTCTAATAAGACTAGTATTGGTACATACATAGAGGAGCAATACTGGGCCCCTCCAAACTTCAAAAGACTTTTGTCTGCAAAATTGAAGTATTTGACTGCAAGGGGTAAACTGATTAAGATGAAACGCAAGTACAGAATTGCACCAGCTTCAGCATTATCTGACAAAAGAAGAAATCCTTCGATGTTGCTATCTCATACAGTTGACAAGGAAGATTCCAATATTATTCCTGCTAAATCTCAGAGGGACATTGAGTTGGCGAAGATGAGGAGGATGAGTCCGCAGGAGGCAGCTGCAGTTGCTGCCCGAGCTGTTGCAGAGGCAGAAGCTGCCATAGCAGAAGCTGAAGAGGCAGCTAAGGTGGCAGAGGCAGCTGAGGCTGATGCCGAAGCTGCACAAGCTTTTGCTGAAGCAGCTATGAAGACATTGAAAGGCAGTAGCACTACCAACCCTAGAATGGTAATCTCTCTCTCAAATTCACATCACTATTAA

Network for GWHGAAZE018629

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	54	104	6.00E-09
PF00538.20	Linker_histone	173	229	1.50E-07

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006334	biological_process	nucleosome assembly
GO:0000786	cellular_component	nucleosome
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.972
	SRR3591706	second leaf	15.166
	SRR3591707	mature leaf	19.044
	SRR3591708	Shoot apex	25.806
	SRR3591709	Stem	39.022
	SRR3591710	White floral bud	34.394
	SRR3591711	White flower	35.483
	SRR3591712	Green floral bud	24.388
	SRR3591713	Yellow flower	33.999
SRP173429	SRR8316895	Juvenile bud stage	12.491
	SRR8316896	Juvenile bud stage	18.159
	SRR8316897	Juvenile bud stage	9.244
	SRR8316894	Third green stage	8.022
	SRR8316900	Third green stage	22.234
	SRR8316901	Third green stage	19.219
	SRR8316898	Complete white stage	10.506
	SRR8316899	Complete white stage	37.664
	SRR8316903	Complete white stage	16.730
	SRR8316902	Silver flowering stage	11.463
	SRR8316904	Silver flowering stage	16.728
	SRR8316905	Silver flowering stage	6.620
	SRR8316906	Gold flowering stage	30.189
	SRR8316907	Gold flowering stage	21.576
	SRR8316908	Gold flowering stage	26.958
SRP132670	SRR6706286	Control	15.713
	SRR6706287	Light intensity 50%	15.394
	SRR6706288	Light intensity 20%	18.427
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.812
	CNS0095593	Slightly white alabastrum(diploid) 2	19.683
	CNS0095594	Slightly white alabastrum(diploid) 3	16.185
	CNS0095595	Whole white alabastrum(diploid) 2	16.743
	CNS0095596	Whole white alabastrum(diploid) 3	16.011
	CNS0095597	Whole white alabastrum(diploid) 4	16.006
	CNS0095598	Silvery flower (diploied) 1	21.995
	CNS0095599	Silvery flower (diploied) 2	19.475
	CNS0095600	Silvery flower (diploied) 3	27.153
	CNS0095601	Golden flower (diploid) 1	20.998
	CNS0095602	Golden flower (diploid) 2	28.754
	CNS0095603	Golden flower (diploid) 3	26.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.118
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.882
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.333
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.430
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.481
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.191
	CNS0095610	Silvery flower (tetraploid) 1	24.704
	CNS0095611	Silvery flower (tetraploid) 2	25.547
	CNS0095612	Silvery flower (tetraploid) 3	19.819
	CNS0095613	Golden flower (tetraploid) 1	19.954
	CNS0095614	Golden flower (tetraploid) 2	19.716
	CNS0095615	Golden flower (tetraploid) 3	27.674
CRA001975	CRR073297	Stem 1	19.035
	CRR073298	Stem 2	13.864
	CRR073299	Stem 3	14.052
	CRR073300	Leaf 1	17.631
	CRR073301	Leaf 2	16.168
	CRR073302	Leaf 3	21.991
	CRR073303	Juvenile bud 1	17.324
	CRR073304	Juvenile bud 2	10.891
	CRR073305	Juvenile bud 3	12.379
	CRR073306	Third green 1	8.591
	CRR073307	Third green 2	9.628
	CRR073308	Third green 3	8.904
	CRR073309	Second white 1	7.535
	CRR073310	Second white 2	10.906
	CRR073311	Second white 3	8.936
	CRR073312	Silver flowering 1	6.992
	CRR073313	Silver flowering 2	6.098
	CRR073314	Silver flowering 3	5.555
	CRR073315	Gold flowering 1	9.736
	CRR073316	Gold flowering 2	14.262
	CRR073317	Gold flowering 3	11.287
	CRR073318	Tawny withering 1	16.524
	CRR073319	Tawny withering 2	17.884
	CRR073320	Tawny withering 3	17.367