Gene detail

Detail information of GWHGAAZE018620

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011001917.1	1.39655E-85	PREDICTED: transcription factor bHLH84-like isoform X1 [Populus euphratica]
Swissprot	tr\|Q7XHI9\|BH084_ARATH	3E-59	Transcription factor bHLH84
trEMBL	tr\|B9HMZ0\|B9HMZ0_POPTR	1E-83	Basic helix-loop-helix family protein {ECO:0000313\|EMBL:EEE87130.2}
TAIR10	AT2G14760.1	1E-41	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21864033	21865299	+
GWHAAZE00000005	mRNA	21864033	21865299	+
GWHAAZE00000005	exon	21864033	21864476	+
GWHAAZE00000005	exon	21864575	21864823	+
GWHAAZE00000005	exon	21864903	21864968	+
GWHAAZE00000005	exon	21865061	21865126	+
GWHAAZE00000005	exon	21865207	21865299	+
GWHAAZE00000005	CDS	21864033	21864476	+
GWHAAZE00000005	CDS	21864575	21864823	+
GWHAAZE00000005	CDS	21864903	21864968	+
GWHAAZE00000005	CDS	21865061	21865126	+
GWHAAZE00000005	CDS	21865207	21865299	+

Transcript Sequence
>GWHTAAZE018642 ATGGAGTCAATGGGAGCCATATCTGGAGAATGGAGCTCCTTTAGTGGAATGTACTCTAAAGAGGAGGCCGACTTCGTAGGCCAAATGTTCGATAATTGTTCGCTTCCAAATGAGTTATCTTGGGGCTCCTTTTTCGATGTCCCTACCCTGTTGCCCGGCTATGAATTATTTGACAACGATTCAATGTATTCTTTGGACAACGTGAATATTAATCAAATTTTGTCAACAAACAATTGTTCTACGTTGATGGATTACTATCTCGGAGGGGGTACCAGCTCACCCATTAGAGTCCTTACCAATAGCCTAGTGGGAGTGGGTGACTTGCAGCCTGAAGCTGTCATAACGGTACCTGAGATGCTAGTGCCTGAGCCCGATCAATCTGTAGAAGAAAAACCCAATAACCCATTGGAGAGATTGAAGAAAATATCTCGCAATTTGGGACATGTCCCAAATAACAAGCTGAGGAAGAACCAGAGGATTGTATCTACTTTGAGCAACGATGAAGATGACAATGCTAGACTTCATAAACAAAGGTTGAGCAATTTCTGCTCAGAGGATGAATCATATGGCTCTAAGGAGTTGAATGCATTGAATACAAGTTCAAAATCCAACGGGGGTGTAGCCCTCAACTCAAATGGAAAGAAACGAGCCAGTAGGGGTTCGGCAACTGATCCCCAGAGCCTCTATGCAAGGAGAAGAAGGGAAAGAATAAATGAAAGATTGAGAGTGTTGCAGAATCTTGTACCTAATGGAACAAAGGTTGACATTAGCACAATGCTGGAAGAGGCTGTAGCGTATGTGAAGTTTTTGCAGCTTCAAATCAAGCTCTTAAGCTCTGATGATCTATGGATGTATGCTCCCATTGCATACAATGGAATGGAGATTGGGCTCGATTTGAAGATCACCTCACCCAAATGA

Network for GWHGAAZE018620

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	231	271	1.70E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.133
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.077
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.072
	SRR3591711	White flower	0.093
	SRR3591712	Green floral bud	0.112
	SRR3591713	Yellow flower	0.196
SRP173429	SRR8316895	Juvenile bud stage	0.060
	SRR8316896	Juvenile bud stage	0.066
	SRR8316897	Juvenile bud stage	0.117
	SRR8316894	Third green stage	0.019
	SRR8316900	Third green stage	0.086
	SRR8316901	Third green stage	0.341
	SRR8316898	Complete white stage	0.047
	SRR8316899	Complete white stage	0.254
	SRR8316903	Complete white stage	0.152
	SRR8316902	Silver flowering stage	0.290
	SRR8316904	Silver flowering stage	0.225
	SRR8316905	Silver flowering stage	0.003
	SRR8316906	Gold flowering stage	0.426
	SRR8316907	Gold flowering stage	0.484
	SRR8316908	Gold flowering stage	0.326
SRP132670	SRR6706286	Control	0.096
	SRR6706287	Light intensity 50%	0.081
	SRR6706288	Light intensity 20%	0.161
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.317
	CNS0095593	Slightly white alabastrum(diploid) 2	0.672
	CNS0095594	Slightly white alabastrum(diploid) 3	0.461
	CNS0095595	Whole white alabastrum(diploid) 2	0.356
	CNS0095596	Whole white alabastrum(diploid) 3	0.274
	CNS0095597	Whole white alabastrum(diploid) 4	0.084
	CNS0095598	Silvery flower (diploied) 1	0.719
	CNS0095599	Silvery flower (diploied) 2	0.621
	CNS0095600	Silvery flower (diploied) 3	0.268
	CNS0095601	Golden flower (diploid) 1	0.164
	CNS0095602	Golden flower (diploid) 2	0.365
	CNS0095603	Golden flower (diploid) 3	0.159
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.075
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.141
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.166
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.258
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.275
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.101
	CNS0095610	Silvery flower (tetraploid) 1	0.159
	CNS0095611	Silvery flower (tetraploid) 2	0.101
	CNS0095612	Silvery flower (tetraploid) 3	0.073
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.064
CRA001975	CRR073297	Stem 1	0.477
	CRR073298	Stem 2	0.085
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.131
	CRR073301	Leaf 2	0.080
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.131
	CRR073305	Juvenile bud 3	0.090
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.201
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.037
	CRR073316	Gold flowering 2	0.533
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.125