Detail information of GWHGAAZE018601


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006346331.14.77749E-70PREDICTED: protein TRI1-like [Solanum tuberosum]
Swissprottr|Q9SIV5|C3H19_ARATH0.00000003Zinc finger CCCH domain-containing protein 19
trEMBLtr|M1CFP1|M1CFP1_SOLTU2E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400066526}
TAIR10AT4G34290.11E-40SWIB/MDM2 domain superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2169288321696831+
GWHAAZE00000005mRNA2169288321696831+
GWHAAZE00000005exon2169288321693179+
GWHAAZE00000005exon2169671221696831+
GWHAAZE00000005CDS2169288321693179+
GWHAAZE00000005CDS2169671221696831+
Transcript Sequence

Network for GWHGAAZE018601

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02201.19SWIB621363.30E-28
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf123.937
SRR3591706second leaf85.079
SRR3591707mature leaf66.081
SRR3591708Shoot apex181.876
SRR3591709Stem59.814
SRR3591710White floral bud66.264
SRR3591711White flower101.482
SRR3591712Green floral bud95.623
SRR3591713Yellow flower75.137
SRP173429 SRR8316895Juvenile bud stage 73.948
SRR8316896Juvenile bud stage 88.972
SRR8316897Juvenile bud stage 48.421
SRR8316894Third green stage 35.548
SRR8316900Third green stage 114.596
SRR8316901Third green stage 103.201
SRR8316898Complete white stage 32.425
SRR8316899Complete white stage 87.528
SRR8316903Complete white stage 52.268
SRR8316902Silver flowering stage30.720
SRR8316904Silver flowering stage32.093
SRR8316905Silver flowering stage19.382
SRR8316906Gold flowering stage 49.705
SRR8316907Gold flowering stage 51.197
SRR8316908Gold flowering stage 68.742
SRP132670SRR6706286Control117.940
SRR6706287Light intensity 50%114.637
SRR6706288Light intensity 20%123.593
CNP0000432CNS0095592Slightly white alabastrum(diploid) 198.045
CNS0095593Slightly white alabastrum(diploid) 299.197
CNS0095594Slightly white alabastrum(diploid) 370.802
CNS0095595Whole white alabastrum(diploid) 274.695
CNS0095596Whole white alabastrum(diploid) 381.100
CNS0095597Whole white alabastrum(diploid) 451.220
CNS0095598Silvery flower (diploied) 193.255
CNS0095599Silvery flower (diploied) 286.073
CNS0095600Silvery flower (diploied) 382.461
CNS0095601Golden flower (diploid) 196.128
CNS0095602Golden flower (diploid) 2101.522
CNS0095603Golden flower (diploid) 396.052
CNS0095604Slightly white alabastrum(tetraploid) 177.947
CNS0095605Slightly white alabastrum(tetraploid) 276.414
CNS0095606Slightly white alabastrum(tetraploid) 3114.241
CNS0095607Whole white alabastrum(tetraploid) 143.965
CNS0095608Whole white alabastrum(tetraploid) 240.414
CNS0095609Whole white alabastrum(tetraploid) 3101.502
CNS0095610Silvery flower (tetraploid) 181.865
CNS0095611Silvery flower (tetraploid) 294.109
CNS0095612Silvery flower (tetraploid) 358.402
CNS0095613Golden flower (tetraploid) 154.698
CNS0095614Golden flower (tetraploid) 277.595
CNS0095615Golden flower (tetraploid) 362.621
CRA001975CRR073297Stem 1101.329
CRR073298Stem 2100.605
CRR073299Stem 3136.994
CRR073300Leaf 173.958
CRR073301Leaf 299.525
CRR073302Leaf 3130.079
CRR073303Juvenile bud 182.701
CRR073304Juvenile bud 288.463
CRR073305Juvenile bud 380.849
CRR073306Third green 136.027
CRR073307Third green 234.889
CRR073308Third green 335.986
CRR073309Second white 165.574
CRR073310Second white 236.545
CRR073311Second white 327.482
CRR073312Silver flowering 141.574
CRR073313Silver flowering 255.852
CRR073314Silver flowering 342.671
CRR073315Gold flowering 196.413
CRR073316Gold flowering 2107.609
CRR073317Gold flowering 3120.670
CRR073318Tawny withering 1100.411
CRR073319Tawny withering 283.718
CRR073320Tawny withering 3109.320