Detail information of GWHGAAZE018591


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010277154.14.1144E-159PREDICTED: G2/mitotic-specific cyclin C13-1-like [Nelumbo nucifera]
Swissprottr|Q9FMH5|CCA31_ARATH3E-129Putative cyclin-A3-1
trEMBLtr|Q40488|Q40488_TOBAC8E-158Cyclin A-like protein {ECO:0000313|EMBL:CAA63540.1}
TAIR10AT1G47230.13E-103CYCLIN A3;4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2157354121576907-
GWHAAZE00000005mRNA2157354121576907-
GWHAAZE00000005exon2157647621576907-
GWHAAZE00000005exon2157533121575563-
GWHAAZE00000005exon2157515921575234-
GWHAAZE00000005exon2157499521575071-
GWHAAZE00000005exon2157483221574865-
GWHAAZE00000005exon2157457821574727-
GWHAAZE00000005exon2157395121574085-
GWHAAZE00000005exon2157354121573783-
GWHAAZE00000005five_prime_UTR2157681521576907-
GWHAAZE00000005CDS2157647621576814-
GWHAAZE00000005CDS2157533121575563-
GWHAAZE00000005CDS2157515921575234-
GWHAAZE00000005CDS2157499521575071-
GWHAAZE00000005CDS2157483221574865-
GWHAAZE00000005CDS2157457821574727-
GWHAAZE00000005CDS2157395121574085-
GWHAAZE00000005CDS2157371221573783-
GWHAAZE00000005three_prime_UTR2157354121573711-
Transcript Sequence

Network for GWHGAAZE018591

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00134.24Cyclin_N1122323.20E-43
PF02984.20Cyclin_C2353578.40E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06627CCNA AMPK signaling pathway map04152
Cell cyclemap04110
Cellular senescencemap04218
Progesterone-mediated oocyte maturationmap04914

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.241
SRR3591706second leaf1.217
SRR3591707mature leaf0.143
SRR3591708Shoot apex8.001
SRR3591709Stem2.019
SRR3591710White floral bud0.419
SRR3591711White flower0.621
SRR3591712Green floral bud0.793
SRR3591713Yellow flower0.244
SRP173429 SRR8316895Juvenile bud stage 1.687
SRR8316896Juvenile bud stage 2.140
SRR8316897Juvenile bud stage 0.889
SRR8316894Third green stage 0.661
SRR8316900Third green stage 1.600
SRR8316901Third green stage 1.450
SRR8316898Complete white stage 0.164
SRR8316899Complete white stage 0.205
SRR8316903Complete white stage 0.051
SRR8316902Silver flowering stage0.362
SRR8316904Silver flowering stage0.292
SRR8316905Silver flowering stage0.065
SRR8316906Gold flowering stage 0.270
SRR8316907Gold flowering stage 0.214
SRR8316908Gold flowering stage 0.214
SRP132670SRR6706286Control1.103
SRR6706287Light intensity 50%0.704
SRR6706288Light intensity 20%0.921
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.766
CNS0095593Slightly white alabastrum(diploid) 22.724
CNS0095594Slightly white alabastrum(diploid) 31.451
CNS0095595Whole white alabastrum(diploid) 21.703
CNS0095596Whole white alabastrum(diploid) 31.436
CNS0095597Whole white alabastrum(diploid) 40.301
CNS0095598Silvery flower (diploied) 10.356
CNS0095599Silvery flower (diploied) 21.081
CNS0095600Silvery flower (diploied) 30.506
CNS0095601Golden flower (diploid) 10.163
CNS0095602Golden flower (diploid) 20.441
CNS0095603Golden flower (diploid) 30.309
CNS0095604Slightly white alabastrum(tetraploid) 11.856
CNS0095605Slightly white alabastrum(tetraploid) 22.983
CNS0095606Slightly white alabastrum(tetraploid) 31.507
CNS0095607Whole white alabastrum(tetraploid) 10.861
CNS0095608Whole white alabastrum(tetraploid) 20.374
CNS0095609Whole white alabastrum(tetraploid) 31.152
CNS0095610Silvery flower (tetraploid) 10.320
CNS0095611Silvery flower (tetraploid) 20.165
CNS0095612Silvery flower (tetraploid) 30.210
CNS0095613Golden flower (tetraploid) 10.205
CNS0095614Golden flower (tetraploid) 20.065
CNS0095615Golden flower (tetraploid) 30.083
CRA001975CRR073297Stem 11.452
CRR073298Stem 21.077
CRR073299Stem 31.525
CRR073300Leaf 10.278
CRR073301Leaf 20.468
CRR073302Leaf 30.242
CRR073303Juvenile bud 10.260
CRR073304Juvenile bud 20.537
CRR073305Juvenile bud 30.374
CRR073306Third green 10.032
CRR073307Third green 20.000
CRR073308Third green 30.270
CRR073309Second white 10.065
CRR073310Second white 20.033
CRR073311Second white 30.002
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.306
CRR073314Silver flowering 30.129
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.067
CRR073317Gold flowering 30.215
CRR073318Tawny withering 12.096
CRR073319Tawny withering 22.107
CRR073320Tawny withering 31.944