Gene detail

Detail information of GWHGAAZE018588

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007200942.1	hypothetical protein PRUPE_ppa001398mg [Prunus persica]
Swissprot	tr\|Q8L7W8\|FUCO2_ARATH	Alpha-L-fucosidase 2 (Precursor)
trEMBL	tr\|M5VMP2\|M5VMP2_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02141.1}
TAIR10	AT4G34260.1	1,2-alpha-L-fucosidases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21553037	21559158	+
GWHAAZE00000005	mRNA	21553037	21559158	+
GWHAAZE00000005	exon	21553037	21553265	+
GWHAAZE00000005	exon	21553836	21553936	+
GWHAAZE00000005	exon	21554783	21555654	+
GWHAAZE00000005	exon	21556322	21556454	+
GWHAAZE00000005	exon	21556629	21556701	+
GWHAAZE00000005	exon	21557495	21557646	+
GWHAAZE00000005	exon	21557744	21557845	+
GWHAAZE00000005	exon	21558169	21558304	+
GWHAAZE00000005	exon	21558448	21558643	+
GWHAAZE00000005	exon	21558840	21559158	+
GWHAAZE00000005	CDS	21553037	21553265	+
GWHAAZE00000005	CDS	21553836	21553936	+
GWHAAZE00000005	CDS	21554783	21555654	+
GWHAAZE00000005	CDS	21556322	21556454	+
GWHAAZE00000005	CDS	21556629	21556701	+
GWHAAZE00000005	CDS	21557495	21557646	+
GWHAAZE00000005	CDS	21557744	21557845	+
GWHAAZE00000005	CDS	21558169	21558304	+
GWHAAZE00000005	CDS	21558448	21558643	+
GWHAAZE00000005	CDS	21558840	21559158	+

Transcript Sequence
>GWHTAAZE018610 ATGGAAGATGATGGTGACTGGGTTATGGTGCGACGACCCACAGATAAAGACTTGTGGAATCCATCAAGCTTGTTAGGAATAGGAGGACCGTCACAAGCTTCGAAGCCTCTCAAGGTTAGTTTCATTGATGGTCCGGCGCAACACTGGACCGATGCTCTTCCTATAGGCAATGGCCGTCTTGGTGCTATGGTTTGGGGTGGCGTCGTTTCTGAGACACTTAATCTCAATGATGCTCCCAAAGCACTGCCAAAGGTCAGGGAGCTTATTGATAACGGGAAATATGCAGATGCTACTATAGCTGCCGAAGATTTGCAAGGAGCTCACACCGATGTTTATCAGCTTCTGGGTGATATGAAGTTAGAGTTTGATGATTTTCATGCTGCCTATGGTGAAGAAACCTATCGGAGAGAGCTAGACTTGGATACTGCTACGGTAAAAGTAAAATACTCTGTAGGTGAAGTCGAATTTATGAGGGAACATTTTTCCTCAAATCCAGATCAAGTGATTGTGACAAAAATTTCTGGAAGCAAATCGGAGTCTCTGTCCTTTACATTATCTCTAACTAGCGAGTTAAATTATACTTCACATGCAAATGGCCGAAATCAAATTATCATGGAAGGAAGTTGTCCTGGTAAAAGAATCCCACGAAAAGCGAATGAGGATGACAATCCTAAGGGCATTCAATTCTCTGCAGTTCTTGACTTACAAATTAGCAATGGCTCGGGCGAGATACAGATTAGCGATGGTAATAAGCTCAAGGTTGAGGGGGCGGATTGGGCTGTTATTCTTCTGGTAGCATCATCTTCATTTGATGGGCCATTCACCAAGCCTTCAGATTCAAAAAGGGATCCTACTTCAGAGTCTCTAAGCTCAATGAACTTGATTAGAAACTTATCGTATTCTCAATTGTATGCTCGCCACTTGGATGACTATCAAAAACTTTTTCATCGTGTCTCCCTTCAGCTTTCAAAAAGCCCTATAAATATTGCCGAAGATGGGTCCTCTGTATATATGGAAGTTAGTGAAAATGAGAGAGTATCAACTGCAGAGAGGGTGATATCTTTTGAAACCGATGAAGATCCTTCTTTAGTGGAACTTTTATTCCAGTATGGTCGATATCTGCTTATTTCATGCTCAAGGCCTGAAACTCAGGCGGCAAATTTGCAGGGAATATGGAACAAGGATATTGAGCCCAAATGGGATGCTGCTCCTCACTTGAATATCAATCTTCAAATGAACTATTGGCCTTCACTTCCGTGCAGCCTTAGTGAATGTCAAGAACCGTTATTTGACCATATTTCCTTTCTGTCTATCAATGGAAGTAAAACAGCAAAAGTGAATTATGAGGCAAGCGGTTGGGTCGTTCATCATGTGTCCGATATATGGGCAAAATCTAATCCAGATCGAGGCCGTGGAGGATATCTGGAAACCAATCCATCAACATCTCCAGAGCATCCATTTATTGCTCCTGATGGTAGGCCTGCTAGTGTGAGCTACTCGTCGACCATGGATATGGCAATCATTAGAGAGGTTTTTTCTGCAGTTGTTTATGCTGCTGAGGTTCTGGGAAAAAGTGAAGATGATCTCGTAAAAAGAGTTTGTAAAGCACAACCGCAGCTTTATCCGACAAAAATTGCCAGGGATGGTTCCATTATGGAATGGGCACTAGATTTTGAGGATCCAGCGGTGCAGCACAGACATTTGTCGCACCTTTTTGGCCTGTTCCCAGGGCATACAATCACTGTGGAAGAAACCCCAGACCTTTGTAAAGCTGCAGAAAAGAGTCTGTATAAAAGAGGGGAAGATGGTCCGGGATGGTCAACAACATGGAAAACTGCTTGTTGGGCACGCCTTCATAACAGCGAGCATGCATATCGGATGGTCAAGCATTTAATTACACTGGTGGATCCTGATCATGAAGTGGCTTTTGAAGGAGGACTTTACGCCAACCTTTTTGCCGCCCACCCCCCTTTCCAGATCGATGCCAACTTGGGTTTTTGTGCAGCAGTAGCTGAAATGCTTGTACAGAGCTCCATGAAGGATCTGTACTTACTGCCTGCTCTTCCTCATGATAAATGGCCTAATGGCTGTGTAAAAGGCTTGAAGACACGTGGGGGTGTGACAGTCAGTATATGGTGGAACGATGAGGATCTTCATGAAGTTGGTGTTTGGTCGATAAACTCGAATTCTTTCCAAAGATTACACTACAGAGGAACAATAGTTGAGGTGAAAATATCACCTGGCAGAATATACACATTCAACAAGCAGTTGAAATGCATAAAGAGTTGCACTTTGGAAACAGCTTCTCTCTGA

Network for GWHGAAZE018588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14498.7	Glyco_hyd_65N_2	43	272	2.10E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15923	AXY8, FUC95A, afcA	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.798
	SRR3591706	second leaf	0.644
	SRR3591707	mature leaf	0.358
	SRR3591708	Shoot apex	0.999
	SRR3591709	Stem	2.109
	SRR3591710	White floral bud	0.447
	SRR3591711	White flower	0.236
	SRR3591712	Green floral bud	0.397
	SRR3591713	Yellow flower	0.103
SRP173429	SRR8316895	Juvenile bud stage	0.538
	SRR8316896	Juvenile bud stage	0.828
	SRR8316897	Juvenile bud stage	0.278
	SRR8316894	Third green stage	0.426
	SRR8316900	Third green stage	0.569
	SRR8316901	Third green stage	0.787
	SRR8316898	Complete white stage	0.261
	SRR8316899	Complete white stage	0.746
	SRR8316903	Complete white stage	0.141
	SRR8316902	Silver flowering stage	0.034
	SRR8316904	Silver flowering stage	0.116
	SRR8316905	Silver flowering stage	0.086
	SRR8316906	Gold flowering stage	0.079
	SRR8316907	Gold flowering stage	0.271
	SRR8316908	Gold flowering stage	0.052
SRP132670	SRR6706286	Control	0.427
	SRR6706287	Light intensity 50%	0.579
	SRR6706288	Light intensity 20%	0.460
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.737
	CNS0095593	Slightly white alabastrum(diploid) 2	0.508
	CNS0095594	Slightly white alabastrum(diploid) 3	0.570
	CNS0095595	Whole white alabastrum(diploid) 2	0.270
	CNS0095596	Whole white alabastrum(diploid) 3	0.312
	CNS0095597	Whole white alabastrum(diploid) 4	0.340
	CNS0095598	Silvery flower (diploied) 1	0.174
	CNS0095599	Silvery flower (diploied) 2	0.429
	CNS0095600	Silvery flower (diploied) 3	0.145
	CNS0095601	Golden flower (diploid) 1	0.535
	CNS0095602	Golden flower (diploid) 2	0.090
	CNS0095603	Golden flower (diploid) 3	0.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.128
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.828
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.747
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.258
	CNS0095610	Silvery flower (tetraploid) 1	0.383
	CNS0095611	Silvery flower (tetraploid) 2	0.257
	CNS0095612	Silvery flower (tetraploid) 3	0.195
	CNS0095613	Golden flower (tetraploid) 1	0.090
	CNS0095614	Golden flower (tetraploid) 2	0.192
	CNS0095615	Golden flower (tetraploid) 3	0.141
CRA001975	CRR073297	Stem 1	0.873
	CRR073298	Stem 2	0.592
	CRR073299	Stem 3	0.614
	CRR073300	Leaf 1	0.670
	CRR073301	Leaf 2	0.631
	CRR073302	Leaf 3	0.317
	CRR073303	Juvenile bud 1	0.319
	CRR073304	Juvenile bud 2	0.106
	CRR073305	Juvenile bud 3	0.207
	CRR073306	Third green 1	0.343
	CRR073307	Third green 2	0.178
	CRR073308	Third green 3	0.247
	CRR073309	Second white 1	0.032
	CRR073310	Second white 2	0.017
	CRR073311	Second white 3	0.033
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.003
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.137
	CRR073316	Gold flowering 2	0.126
	CRR073317	Gold flowering 3	0.125
	CRR073318	Tawny withering 1	0.485
	CRR073319	Tawny withering 2	0.657
	CRR073320	Tawny withering 3	1.841