Gene detail

Detail information of GWHGAAZE018587

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006422892.1	0	hypothetical protein CICLE_v10027816mg [Citrus clementina]
Swissprot	tr\|Q8L7W8\|FUCO2_ARATH	0	Alpha-L-fucosidase 2 (Precursor)
trEMBL	tr\|V4S6V8\|V4S6V8_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR36132.1}
TAIR10	AT4G34260.1	6E-167	1,2-alpha-L-fucosidases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21545148	21550532	+
GWHAAZE00000005	mRNA	21545148	21550532	+
GWHAAZE00000005	exon	21545148	21545301	+
GWHAAZE00000005	exon	21545428	21545573	+
GWHAAZE00000005	exon	21546290	21546391	+
GWHAAZE00000005	exon	21546598	21547104	+
GWHAAZE00000005	exon	21548186	21548344	+
GWHAAZE00000005	exon	21548954	21549178	+
GWHAAZE00000005	exon	21549282	21549383	+
GWHAAZE00000005	exon	21549503	21549638	+
GWHAAZE00000005	exon	21549783	21549978	+
GWHAAZE00000005	exon	21550211	21550532	+
GWHAAZE00000005	CDS	21545148	21545301	+
GWHAAZE00000005	CDS	21545428	21545573	+
GWHAAZE00000005	CDS	21546290	21546391	+
GWHAAZE00000005	CDS	21546598	21547104	+
GWHAAZE00000005	CDS	21548186	21548344	+
GWHAAZE00000005	CDS	21548954	21549178	+
GWHAAZE00000005	CDS	21549282	21549383	+
GWHAAZE00000005	CDS	21549503	21549638	+
GWHAAZE00000005	CDS	21549783	21549978	+
GWHAAZE00000005	CDS	21550211	21550532	+

Transcript Sequence
>GWHTAAZE018609 ATGGGAGGAGGATCATCATCACAAGCTTCGAAGCCTCTCAAGGTTAGCTTCAATGCTCCGGCGGAGCAATGGACCGACGCTCTTCCCATCGGCAATGGCCGTCTCGGCGCTATGGTTTGGGGAGGCCTCGTTTCTGAGACCATTAATCTTAACGAGGATACACTTTGGACTGGAATTCCAGGGAATTACGCGAATCCAGATGCTCCCAAAGCACTATCAGAGGTCAGGGAGCTTATTGATGATGGCAAATATGCAGATGCTACTGAGGTTGCGGTAGATTTGCAAGGAAATCCCCCCAATGTTTATCAGCTTCTGGGTGATATGAAGTTAGAGTTTGATGATTTCCATGCTGCCTATGGTGAAGAAACCTATCGGAGAGAGCTAGACTTGGATACTGCAATGAATCCCACAAAAGTAAATGAGGATGACAATCCTAAGGGCATTCAATTCTCCGCAGTTCTTGACTTACAAATTAGTTCGGGCGAGATACAAATTAGCGATGGTAATAAGCTAAAGGTTGAGGGGGCAGATTGGGCTGTTATTCTTCTGGTAGCATCATCTTCATTTGATGGGCCATTCACCAAGCCTTCAGATTCAAAAAAGGATCCTACTTTAAATTCTCTAAGCTCAATGAACTCGATTAGAAACTTATCGTATTCTCAACTGTATGCTCGCCACTTGGATGACTATCAAAAACTTTTTCATCGTGTCTCCCTTCAGCTTTCAAAAAGCCCTATAAATATTGCCGAAGATGGGTCCTCTGTATATATGGAAGCTAGTGAAAATGAGAGAGTATCAACTGCAGAGAGGGTGATATCTTTTGAAACCGATGAAGATCCTTCTTTAGTGGAACTTTTATTCCAGTATGGTCGATATCTGCTTATTTCATGCTCGAGGCCTGGAACTCAGGTGAATTATGAGGCAAGCGGTTGGGTAGCTCATCATGTGTCTGATGTATGGGCTAAAACTTCTCCACATCGAGGTGATGTTGTCTGGGCTGTATGGCCAATGGGTGGAGCATGGCTTTGTACCCATTTATGGGAGCACTATACTTTCACAATGGACAACGAATTTCTAGAAAATAAAGCATATCCCTTGCTGGAAGGATGTGCTTCATTTCTTTTGGACTGGTTGATTGAAGGCCGTGGAGGATATCTGGAAACCAACCCTTCAACATCTCCAGAGCATCAGTTTATTGCTCCTGATGGTAAGCTTGCTAGTGTGAGCTACTCATCCACCATGGATATGGCAATCATTAGAGAGGTTTTTTCTGCCATTGTTTCTGCTGCTGAGGTTCTGGGAAAAAGTGAAGATCATCTGGTAAAAAGAGTTTGTAAAGCTCAACCACGGCTTTATCCAACAAACATTGCTAGGGACGGTTCCATTATGGAATGGGCACAAGATTTTGAGGATCCAGAGGTGCATCACAGACATTTGTCGCACCTTTTTGGCCTGTTCCCAGGGCATACAATAACTGTTGAAAAAACTCCAGACCTTTGTAAAGCTGCAGAAAATAGTCTGTATAAAAGAGGGGAAGATGGTCCAGGATGGTCAACAACATGGAAAACTGCTTTGTGGGCACGTCTTCATAACAGTGAACATGCGTATAGGATGGTCAAGCATTTAATTAAATTGGTGGATTCTGATCATGAAGTGGGTTTTGAAGGAGGACTTTATGCTAACCTTTTTGGTGCCCACCCCCCTTTCCAGATCGATGCCAACTTTGGTTTTTGTGCAGCAATAGCTGAAATGCTTGTACAGAGCTCCATGAAGGATCTGTACTTACTTCCTGCTCTTCCTCGCAATAAATGGCCTAATGGCTGTGTAAAAGGCTTGAAGGCACGTGGAGGTGTGACAGTCGGTATATGCTGGAACGACGGTGATCTTCATGAAGTTGGTGTTTGGTCCATAAACCTGGGGAATTCTATCACAAGATTACACTATAGAGGAACCACAGTTGAGGCTAAAATATCACCCGGCAGAATATACACATTCAACAAGCAGTTGAAATGCGTAAAAAGTTTCTCTTTGGAGACGGCTTCTGTCTGA

Network for GWHGAAZE018587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14498.7	Glyco_hyd_65N_2	16	137	2.20E-37

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15923	AXY8, FUC95A, afcA	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.768
	SRR3591706	second leaf	10.037
	SRR3591707	mature leaf	10.654
	SRR3591708	Shoot apex	13.297
	SRR3591709	Stem	26.813
	SRR3591710	White floral bud	13.556
	SRR3591711	White flower	21.497
	SRR3591712	Green floral bud	15.884
	SRR3591713	Yellow flower	15.228
SRP173429	SRR8316895	Juvenile bud stage	6.918
	SRR8316896	Juvenile bud stage	9.482
	SRR8316897	Juvenile bud stage	3.995
	SRR8316894	Third green stage	3.553
	SRR8316900	Third green stage	8.590
	SRR8316901	Third green stage	7.025
	SRR8316898	Complete white stage	2.494
	SRR8316899	Complete white stage	13.967
	SRR8316903	Complete white stage	4.236
	SRR8316902	Silver flowering stage	2.756
	SRR8316904	Silver flowering stage	4.730
	SRR8316905	Silver flowering stage	2.368
	SRR8316906	Gold flowering stage	8.101
	SRR8316907	Gold flowering stage	7.503
	SRR8316908	Gold flowering stage	5.819
SRP132670	SRR6706286	Control	8.969
	SRR6706287	Light intensity 50%	9.449
	SRR6706288	Light intensity 20%	9.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.716
	CNS0095593	Slightly white alabastrum(diploid) 2	3.970
	CNS0095594	Slightly white alabastrum(diploid) 3	5.829
	CNS0095595	Whole white alabastrum(diploid) 2	5.222
	CNS0095596	Whole white alabastrum(diploid) 3	3.018
	CNS0095597	Whole white alabastrum(diploid) 4	3.399
	CNS0095598	Silvery flower (diploied) 1	8.291
	CNS0095599	Silvery flower (diploied) 2	7.339
	CNS0095600	Silvery flower (diploied) 3	9.274
	CNS0095601	Golden flower (diploid) 1	7.987
	CNS0095602	Golden flower (diploid) 2	10.920
	CNS0095603	Golden flower (diploid) 3	10.271
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.833
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.320
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.773
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.251
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.349
	CNS0095610	Silvery flower (tetraploid) 1	9.949
	CNS0095611	Silvery flower (tetraploid) 2	6.367
	CNS0095612	Silvery flower (tetraploid) 3	4.615
	CNS0095613	Golden flower (tetraploid) 1	2.457
	CNS0095614	Golden flower (tetraploid) 2	5.233
	CNS0095615	Golden flower (tetraploid) 3	2.078
CRA001975	CRR073297	Stem 1	8.061
	CRR073298	Stem 2	8.472
	CRR073299	Stem 3	8.894
	CRR073300	Leaf 1	8.461
	CRR073301	Leaf 2	8.135
	CRR073302	Leaf 3	7.246
	CRR073303	Juvenile bud 1	6.739
	CRR073304	Juvenile bud 2	4.507
	CRR073305	Juvenile bud 3	8.237
	CRR073306	Third green 1	2.076
	CRR073307	Third green 2	1.270
	CRR073308	Third green 3	1.493
	CRR073309	Second white 1	1.362
	CRR073310	Second white 2	2.428
	CRR073311	Second white 3	1.157
	CRR073312	Silver flowering 1	1.746
	CRR073313	Silver flowering 2	0.811
	CRR073314	Silver flowering 3	1.823
	CRR073315	Gold flowering 1	3.961
	CRR073316	Gold flowering 2	5.597
	CRR073317	Gold flowering 3	2.663
	CRR073318	Tawny withering 1	10.375
	CRR073319	Tawny withering 2	7.050
	CRR073320	Tawny withering 3	7.437