Gene detail

Detail information of GWHGAAZE018586

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007200942.1	hypothetical protein PRUPE_ppa001398mg [Prunus persica]
Swissprot	tr\|Q8L7W8\|FUCO2_ARATH	Alpha-L-fucosidase 2 (Precursor)
trEMBL	tr\|M5VMP2\|M5VMP2_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ02141.1}
TAIR10	AT4G34260.1	1,2-alpha-L-fucosidases

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21536488	21543411	+
GWHAAZE00000005	mRNA	21536488	21543411	+
GWHAAZE00000005	exon	21536488	21536695	+
GWHAAZE00000005	exon	21538007	21538152	+
GWHAAZE00000005	exon	21538890	21539755	+
GWHAAZE00000005	exon	21540403	21540535	+
GWHAAZE00000005	exon	21540655	21540813	+
GWHAAZE00000005	exon	21541303	21541527	+
GWHAAZE00000005	exon	21541610	21541711	+
GWHAAZE00000005	exon	21541847	21541982	+
GWHAAZE00000005	exon	21542356	21542551	+
GWHAAZE00000005	exon	21543108	21543411	+
GWHAAZE00000005	CDS	21536488	21536695	+
GWHAAZE00000005	CDS	21538007	21538152	+
GWHAAZE00000005	CDS	21538890	21539755	+
GWHAAZE00000005	CDS	21540403	21540535	+
GWHAAZE00000005	CDS	21540655	21540813	+
GWHAAZE00000005	CDS	21541303	21541527	+
GWHAAZE00000005	CDS	21541610	21541711	+
GWHAAZE00000005	CDS	21541847	21541982	+
GWHAAZE00000005	CDS	21542356	21542551	+
GWHAAZE00000005	CDS	21543108	21543411	+

Transcript Sequence
>GWHTAAZE018608 ATGGAAGAGGGTGGTTGGGTTATGGTGCAACGACCCACAGAGATAGATTTGTGGAATACAAGCTTGTTTGGAGCAGAAACTTCGAAGTCCCTCAAGCTTAGGTTCAATGAGCCAGCTCAGTACTGGACAGACGCTATTCCCACCGGCAATGGCCGTCTTGGCGCTATGGTTTGGGGCGCCACCGCTTCTGAAACCCTTAATCTCAATGAGGACACACTTTGGACTGGGATTCCTGGGAATTACACAAACCCAGATGCTCCCAAGGTGCTATCAGAGGTCAGAAAACTTGTTGATGATGGCAAATACGCCGAAGCTACTACAGCAGCCGTCAATTTGTCAGGAAAGCCTTCTGATGTTTACCAGCTTCTGGGTGATATGAAGTTAGAATTTGATAATTCCCATGCTGCATATGATGAAGAAACTTATCAGAGAGAGCTAGACTTGGATACTGCAACAGTAAAAGTAAAATATTCTGTAGGTGAAGTAGAATTCACTAGGGAACATTTTTCCTCAAACCCGGATCAAGTGATTGTGACCAAAATCTCTGCAAGTAAATCCAAGTCTCTGTCGTTTACAGTATCTCTCACCAGTTTGTTACATCATAATTCCTATGTAAATAGCCAAAACCAGATTATCATGGAAGGAATTTGTCCTGGTAAAAGAATCCCACCAAAAGAAAACGGTCATGGCTATAAAAAGGGAATTCAATATTCTGCAGTTCTTAATTTGCAAATTAGCGATGGTGCGGGTGAAATACATGTTTTGGATGACAGGAAACTAAAGGTTGAAGGGGTGGATTGGGCTGTTATTCTACTGGTAGCATCATCTTCATTCGATGGGCCATTCACCAATCCTTCAGATTCAAAGAAGGATCCTACTTCAGAGTCCCTAAGCACAATGAACTCGATTAGAAGCTTATCGTATTCTCAACTCTATGCTCGCCACTTGGATGACTATCAAAAACTTTTTCATCGAGTCTCCCTTCAGCTTTCAAAAAGCTCCAGTAATGTTACAAAAAATGGGTCCTCTGTAACTGAGAGTGGAGATGAGAAAATATCAACTGCACAAAGGGTGAAATCTTTTAAAACTGATGAAGATCCCTCTTTCGTGGAGCTTTTATTCCAGTATGGGCGATATCTTCTTATTTCATGTTCAAGGCCAGGAACTCAGGTTGCAAACTTGCAAGGAATATGGAACAAGGATGTTGAACCAGCATGGGATGGTGCTCCTCACTTGAATATCAATCTTCAAATGAACTATTGGCCATCGCTTCCCTGCAACCTTCACGAGTGCCAGGAACCCTTATTTGACTACACATCCTCTCTGTCAGTTAATGGGAAGAAAACTGCAAAGGTGAACTATGAAGCAAGTGGTTGGGTGGCACATCAGGTGTCTGATTTATGGGCAAAAACATCCCCTGATCGAGGTGAGGCTGTGTGGGCTTTGTGGCCAATGGGTGGAGCTTGGCTTTGTACTCATTTATGGGAACATTATACTTTTACAATGGACAAAGATTTTCTAGAAAATAAAGCATATCCTTTGATGGAAGGATGCGCTTCATTTCTTTTGGACTGGTTGATCGAAGGTCATGGAGGATATTTAGAAACCAACCCTTCAACATCTCCAGAACACATGTTCACTGCACCTAATGGTAAGCCTGCTAGTGTGAGCTACTCATCAACCATGGATATGTCGATCATTAGAGAAGTGTTCTCAGCCGTGGTTTCTGCTGCTGAGGTGTTGGGGAAAAGTAAGGATGTTATGGTAGAAAAAGTTCAGAAAGCTCAAGCGCGGCTTTATCCAACAAAAATTGCTAGGGATGGTTCCATTATGGAATGGGCCCAAGATTTTGAGGATCCAGAGGTGCATCATAGGCATGTGTCGCACCTATTCGGCTTGTTCCCAGGGCATACAATAACTGTGGAAGAAACACCTGATCTCTCTAAAGCTGCAGACTATACTCTCATTAAAAGAGGGGAGGAAGGCCCGGGCTGGTCAACTACATGGAAAGCTGCATTATGGGCACGTCTTCACAACAGTGAGCATGCATATAGGATGGTGAAGCATTTGATTGACTTGGTGGATCCTGATCATGAAGGTGATTATGAAGGAGGACTATACAGTAATCTCTTCACCGCTCACCCTCCATTCCAGATAGATGCCAACTTTGGTTTCTCTGCAGCAGTGTCTGAAATGCTTGTGCAGAGCACTATGAAAGATCTCTACTTACTTCCAGCTCTTCCTCGTGATAAATGGGCGAATGGTTGTGTTAAAGGGTTGAAGGCGCGTGGGGGTGTGACGGTAAGTATCTGCTGGACTGAAGGAGATCTTCACGAAGTTGGTCTTTGGTCCACAAATGAGAATTCTATCAAAAGATTGCACTACAGAGGAAATATTGTCATGGCAAAAATATCGTCCGGAAAAGTATACACATTTAACAAATTGTTAAAATGCATAAATACCTACTCGCTGTAA

Network for GWHGAAZE018586

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14498.7	Glyco_hyd_65N_2	33	280	4.10E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15923	AXY8, FUC95A, afcA	Other glycan degradation	map00511

Gene Ontology

GO term	Ontology	Name
GO:0003824	molecular_function	catalytic activity
GO:0004560	molecular_function	alpha-L-fucosidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	37.481
	SRR3591706	second leaf	15.570
	SRR3591707	mature leaf	10.046
	SRR3591708	Shoot apex	29.984
	SRR3591709	Stem	17.130
	SRR3591710	White floral bud	41.513
	SRR3591711	White flower	64.672
	SRR3591712	Green floral bud	30.990
	SRR3591713	Yellow flower	115.077
SRP173429	SRR8316895	Juvenile bud stage	19.340
	SRR8316896	Juvenile bud stage	23.368
	SRR8316897	Juvenile bud stage	18.099
	SRR8316894	Third green stage	16.875
	SRR8316900	Third green stage	65.607
	SRR8316901	Third green stage	62.890
	SRR8316898	Complete white stage	29.442
	SRR8316899	Complete white stage	63.245
	SRR8316903	Complete white stage	54.217
	SRR8316902	Silver flowering stage	28.669
	SRR8316904	Silver flowering stage	60.692
	SRR8316905	Silver flowering stage	26.269
	SRR8316906	Gold flowering stage	84.692
	SRR8316907	Gold flowering stage	63.778
	SRR8316908	Gold flowering stage	50.604
SRP132670	SRR6706286	Control	42.930
	SRR6706287	Light intensity 50%	46.967
	SRR6706288	Light intensity 20%	52.625
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.199
	CNS0095593	Slightly white alabastrum(diploid) 2	34.773
	CNS0095594	Slightly white alabastrum(diploid) 3	26.725
	CNS0095595	Whole white alabastrum(diploid) 2	28.515
	CNS0095596	Whole white alabastrum(diploid) 3	36.797
	CNS0095597	Whole white alabastrum(diploid) 4	26.431
	CNS0095598	Silvery flower (diploied) 1	13.932
	CNS0095599	Silvery flower (diploied) 2	13.550
	CNS0095600	Silvery flower (diploied) 3	44.706
	CNS0095601	Golden flower (diploid) 1	14.307
	CNS0095602	Golden flower (diploid) 2	43.420
	CNS0095603	Golden flower (diploid) 3	40.652
	CNS0095604	Slightly white alabastrum(tetraploid) 1	34.383
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.321
	CNS0095606	Slightly white alabastrum(tetraploid) 3	55.094
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.715
	CNS0095608	Whole white alabastrum(tetraploid) 2	21.947
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.804
	CNS0095610	Silvery flower (tetraploid) 1	58.722
	CNS0095611	Silvery flower (tetraploid) 2	31.506
	CNS0095612	Silvery flower (tetraploid) 3	24.435
	CNS0095613	Golden flower (tetraploid) 1	45.433
	CNS0095614	Golden flower (tetraploid) 2	48.446
	CNS0095615	Golden flower (tetraploid) 3	62.588
CRA001975	CRR073297	Stem 1	43.389
	CRR073298	Stem 2	37.944
	CRR073299	Stem 3	27.332
	CRR073300	Leaf 1	83.301
	CRR073301	Leaf 2	80.780
	CRR073302	Leaf 3	65.227
	CRR073303	Juvenile bud 1	70.529
	CRR073304	Juvenile bud 2	48.779
	CRR073305	Juvenile bud 3	102.527
	CRR073306	Third green 1	36.467
	CRR073307	Third green 2	45.177
	CRR073308	Third green 3	42.640
	CRR073309	Second white 1	13.288
	CRR073310	Second white 2	13.385
	CRR073311	Second white 3	14.981
	CRR073312	Silver flowering 1	28.784
	CRR073313	Silver flowering 2	27.109
	CRR073314	Silver flowering 3	33.544
	CRR073315	Gold flowering 1	10.379
	CRR073316	Gold flowering 2	19.301
	CRR073317	Gold flowering 3	6.693
	CRR073318	Tawny withering 1	21.770
	CRR073319	Tawny withering 2	16.431
	CRR073320	Tawny withering 3	20.900