Detail information of GWHGAAZE018578


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011088209.10PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Sesamum indicum]
Swissprottr|C0LGS3|Y4372_ARATH0Probable LRR receptor-like serine/threonine-protein kinase At4g37250 (Precursor)
trEMBLtr|A0A068TPF1|A0A068TPF1_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313|EMBL:CDO97218.1}
TAIR10AT4G34220.10Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000005gene2137159321375021-
GWHAAZE00000005mRNA2137159321375021-
GWHAAZE00000005exon2137159321372254-
GWHAAZE00000005exon2137309421373652-
GWHAAZE00000005exon2137393321375021-
GWHAAZE00000005CDS2137393321375021-
GWHAAZE00000005CDS2137309421373652-
GWHAAZE00000005CDS2137159321372254-
Transcript Sequence

Network for GWHGAAZE018578

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08263.13LRRNT_229681.60E-10
PF13855.7LRR_81061656.40E-08
PF00069.26Pkinase4667618.60E-27
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_LRR-III

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.015
SRR3591706second leaf17.347
SRR3591707mature leaf3.127
SRR3591708Shoot apex14.947
SRR3591709Stem7.515
SRR3591710White floral bud17.644
SRR3591711White flower10.907
SRR3591712Green floral bud34.215
SRR3591713Yellow flower4.249
SRP173429 SRR8316895Juvenile bud stage 11.725
SRR8316896Juvenile bud stage 13.297
SRR8316897Juvenile bud stage 7.073
SRR8316894Third green stage 7.567
SRR8316900Third green stage 22.265
SRR8316901Third green stage 22.020
SRR8316898Complete white stage 2.666
SRR8316899Complete white stage 12.452
SRR8316903Complete white stage 5.794
SRR8316902Silver flowering stage1.054
SRR8316904Silver flowering stage6.181
SRR8316905Silver flowering stage1.033
SRR8316906Gold flowering stage 3.208
SRR8316907Gold flowering stage 1.028
SRR8316908Gold flowering stage 4.494
SRP132670SRR6706286Control21.275
SRR6706287Light intensity 50%23.570
SRR6706288Light intensity 20%23.669
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.062
CNS0095593Slightly white alabastrum(diploid) 221.622
CNS0095594Slightly white alabastrum(diploid) 316.623
CNS0095595Whole white alabastrum(diploid) 213.831
CNS0095596Whole white alabastrum(diploid) 318.805
CNS0095597Whole white alabastrum(diploid) 413.347
CNS0095598Silvery flower (diploied) 15.712
CNS0095599Silvery flower (diploied) 29.471
CNS0095600Silvery flower (diploied) 36.105
CNS0095601Golden flower (diploid) 13.118
CNS0095602Golden flower (diploid) 23.623
CNS0095603Golden flower (diploid) 34.415
CNS0095604Slightly white alabastrum(tetraploid) 124.948
CNS0095605Slightly white alabastrum(tetraploid) 218.499
CNS0095606Slightly white alabastrum(tetraploid) 345.858
CNS0095607Whole white alabastrum(tetraploid) 111.096
CNS0095608Whole white alabastrum(tetraploid) 28.115
CNS0095609Whole white alabastrum(tetraploid) 330.324
CNS0095610Silvery flower (tetraploid) 17.420
CNS0095611Silvery flower (tetraploid) 23.561
CNS0095612Silvery flower (tetraploid) 37.357
CNS0095613Golden flower (tetraploid) 10.260
CNS0095614Golden flower (tetraploid) 25.751
CNS0095615Golden flower (tetraploid) 36.258
CRA001975CRR073297Stem 134.406
CRR073298Stem 233.739
CRR073299Stem 335.093
CRR073300Leaf 152.217
CRR073301Leaf 241.405
CRR073302Leaf 336.501
CRR073303Juvenile bud 139.283
CRR073304Juvenile bud 231.863
CRR073305Juvenile bud 341.905
CRR073306Third green 130.135
CRR073307Third green 218.264
CRR073308Third green 337.293
CRR073309Second white 17.524
CRR073310Second white 26.577
CRR073311Second white 31.380
CRR073312Silver flowering 10.996
CRR073313Silver flowering 21.262
CRR073314Silver flowering 31.232
CRR073315Gold flowering 10.462
CRR073316Gold flowering 21.158
CRR073317Gold flowering 30.567
CRR073318Tawny withering 13.338
CRR073319Tawny withering 22.858
CRR073320Tawny withering 34.211