Gene detail

Detail information of GWHGAAZE018569

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007042502.1	0	DNA-directed RNA polymerase family protein [Theobroma cacao]
Swissprot	tr\|Q39211\|NRPB3_ARATH	0	DNA-directed RNA polymerases II, IV and V subunit 3
trEMBL	tr\|A0A061E7U0\|A0A061E7U0_THECC	0	DNA-directed RNA polymerase family protein {ECO:0000313\|EMBL:EOX98333.1}
TAIR10	AT2G15430.1	7E-154	DNA-directed RNA polymerase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21289360	21293511	-
GWHAAZE00000005	mRNA	21289360	21293511	-
GWHAAZE00000005	exon	21289360	21289632	-
GWHAAZE00000005	exon	21289950	21290187	-
GWHAAZE00000005	exon	21293054	21293511	-
GWHAAZE00000005	CDS	21293054	21293511	-
GWHAAZE00000005	CDS	21289950	21290187	-
GWHAAZE00000005	CDS	21289360	21289632	-

Transcript Sequence
>GWHTAAZE018591 ATGGAAGGAGGAGCATCCTACCAGAGATTCCCTAGGGTTAAGATCCGAGAGCTCAAAGACGACTACGCTAAGTTCGAACTCCGAGACACCGATGCAAGCGTGGCCAACGCCCTCCGCCGTGTCATGATATCCGAGGTTCCCACCATAGCCATAGACCTGGTCGAGATCGAGGTCAACTCCTCGGTTCTCAACGACGAGTTCCTCGCTCATCGCCTCGGCCTCATCCCCCTCACCAGCGAGCGTGCCATGAGCATGCGCTTCTCACGTGACTGCGATGCTTGCGATGGTGATGGGCAGTGCGAGTTCTGCTCCGTTGAGTTCCATCTCAGAGCCAAGTGCATCAATGACCAAACCCTAGATGTTACAAGCAAGGATCTCTATAGCTCTGACCACACTGTTGTTCCTGTTGATTTCACCGATTCTCCTGCCTTCGACAACAACAATAATAATGAATCCAAGGGAATAATAATTGTGAAACTACGCCGTGGACAAGAGCTGAGGCTGAGAGCCATAGCAAGGAAAGGGATTGGGAAAGATCATGCAAAGTGGTCACCTGCTGCTACTGTTACTTTCATGTATGAACCTGAGATTCATATCAATGAAGATATGATGGAGACACTAACACTTGAGGAGAAAAAAAGTTTGGTTGAAAGCAGTCCTACGAGAGTGTTTGAGATTGACCCTGACACCCAACAGGTGGTTGTAGTTGATCCCGAGGCCTACACTTACGATGATGAAGTGCTCAAGAAAGCCGAAGCTATGGGGAAGCCGGGACTGGTGGAAATCTATGCGAAAGAAGACAGTTTTATATTCACTGTGGAATCTACTGGTGCAGTCAAAGCTTCAAACCTGGTGCTCAATGCCATTGAAATCTTGAAGCAGAAGCTTGATGCGGTTCGGCTGGCTGAGGATACTGTAGAAGCTGACGAACAATTTGGTGAATTGGGTGCTCATATGCGAGGAGGTTGA

Network for GWHGAAZE018569

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01193.25	RNA_pol_L	24	296	1.40E-21
PF01000.27	RNA_pol_A_bac	54	184	6.80E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03011	RPB3, POLR2C	RNA polymerase	map03020

Gene Ontology

GO term	Ontology	Name
GO:0006351	biological_process	transcription, DNA-templated
GO:0046983	molecular_function	protein dimerization activity
GO:0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	48.642
	SRR3591706	second leaf	22.233
	SRR3591707	mature leaf	20.580
	SRR3591708	Shoot apex	77.291
	SRR3591709	Stem	30.656
	SRR3591710	White floral bud	40.753
	SRR3591711	White flower	62.273
	SRR3591712	Green floral bud	43.376
	SRR3591713	Yellow flower	47.025
SRP173429	SRR8316895	Juvenile bud stage	39.955
	SRR8316896	Juvenile bud stage	52.388
	SRR8316897	Juvenile bud stage	25.270
	SRR8316894	Third green stage	19.121
	SRR8316900	Third green stage	60.439
	SRR8316901	Third green stage	59.301
	SRR8316898	Complete white stage	20.869
	SRR8316899	Complete white stage	72.365
	SRR8316903	Complete white stage	28.651
	SRR8316902	Silver flowering stage	22.494
	SRR8316904	Silver flowering stage	30.267
	SRR8316905	Silver flowering stage	16.673
	SRR8316906	Gold flowering stage	42.222
	SRR8316907	Gold flowering stage	49.479
	SRR8316908	Gold flowering stage	48.011
SRP132670	SRR6706286	Control	58.981
	SRR6706287	Light intensity 50%	60.134
	SRR6706288	Light intensity 20%	63.927
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	55.169
	CNS0095593	Slightly white alabastrum(diploid) 2	52.914
	CNS0095594	Slightly white alabastrum(diploid) 3	48.957
	CNS0095595	Whole white alabastrum(diploid) 2	46.105
	CNS0095596	Whole white alabastrum(diploid) 3	38.093
	CNS0095597	Whole white alabastrum(diploid) 4	42.945
	CNS0095598	Silvery flower (diploied) 1	59.406
	CNS0095599	Silvery flower (diploied) 2	55.975
	CNS0095600	Silvery flower (diploied) 3	55.642
	CNS0095601	Golden flower (diploid) 1	55.847
	CNS0095602	Golden flower (diploid) 2	63.446
	CNS0095603	Golden flower (diploid) 3	56.245
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.100
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.151
	CNS0095606	Slightly white alabastrum(tetraploid) 3	84.524
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.838
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.485
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.832
	CNS0095610	Silvery flower (tetraploid) 1	61.303
	CNS0095611	Silvery flower (tetraploid) 2	59.487
	CNS0095612	Silvery flower (tetraploid) 3	36.360
	CNS0095613	Golden flower (tetraploid) 1	39.321
	CNS0095614	Golden flower (tetraploid) 2	51.076
	CNS0095615	Golden flower (tetraploid) 3	33.663
CRA001975	CRR073297	Stem 1	59.652
	CRR073298	Stem 2	59.227
	CRR073299	Stem 3	74.609
	CRR073300	Leaf 1	52.726
	CRR073301	Leaf 2	58.255
	CRR073302	Leaf 3	54.907
	CRR073303	Juvenile bud 1	59.195
	CRR073304	Juvenile bud 2	44.402
	CRR073305	Juvenile bud 3	68.324
	CRR073306	Third green 1	15.535
	CRR073307	Third green 2	18.077
	CRR073308	Third green 3	20.974
	CRR073309	Second white 1	31.003
	CRR073310	Second white 2	27.739
	CRR073311	Second white 3	22.293
	CRR073312	Silver flowering 1	23.112
	CRR073313	Silver flowering 2	29.799
	CRR073314	Silver flowering 3	20.872
	CRR073315	Gold flowering 1	43.487
	CRR073316	Gold flowering 2	51.969
	CRR073317	Gold flowering 3	39.340
	CRR073318	Tawny withering 1	70.006
	CRR073319	Tawny withering 2	67.026
	CRR073320	Tawny withering 3	78.153