Gene detail

Detail information of GWHGAAZE018568

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001234753.1	5.0476E-135	CycD3;2 protein [Solanum lycopersicum]
Swissprot	tr\|Q9FGQ7\|CCD32_ARATH	2E-103	Cyclin-D3-2
trEMBL	tr\|Q9SMD5\|Q9SMD5_SOLLC	2E-135	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc01g107730.2.1}
TAIR10	AT5G67260.1	2E-83	CYCLIN D3;2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21272407	21275535	+
GWHAAZE00000005	mRNA	21272407	21275535	+
GWHAAZE00000005	exon	21272407	21272916	+
GWHAAZE00000005	exon	21273323	21273530	+
GWHAAZE00000005	exon	21273886	21274016	+
GWHAAZE00000005	exon	21275221	21275535	+
GWHAAZE00000005	CDS	21272407	21272916	+
GWHAAZE00000005	CDS	21273323	21273530	+
GWHAAZE00000005	CDS	21273886	21274016	+
GWHAAZE00000005	CDS	21275221	21275535	+

Transcript Sequence
>GWHTAAZE018590 ATGGCAATCCAACAATCCATTCTCCTCTGTGAAGAACAAGAAGATCAATGGGATTATGATGAATTATCCCTAGACTCCATTGAAGAAGAATCTCGATCAGATCTCGCATATAATTATTACCTTAACAAAAACAAAAAAGGTCCCATTAATAATCCCCTGTTCAACTTATTAGAACAGGACTTTTTCTGGGAAGATGAAGAACTCATCTCTCTTTTCTCTAAAGAAAAACAGACCCATCTTTGTTTTGACCATTTTGAATCCAACCCATTTCTTGTTATGGCTAGAAAAGAGGTTGTGGATTGGATTGTGAAAGTTAAAGAGCATTATGGGTTCTCTGTTCTCACTGCTGTTCTTGCAATCAATTACTTTGATAGATATATTCTCTCTAGTAGTAATGTTGAGTTTCAGAAAGATAAGAAGCCATGGATGATTCAGCTTGTTGCTGTCACTTGCCTCTCTTTGGCTGCCAAGATTGATGAGATCCATGTTCCCCTTCTTCTTGACCTTCAAGTGGAGGATACAAAGTACGTATTTGAAGCAAAAACGATACAAAGAATGGAGGTGATAGTGATGTCAATTCTTGAATGGAGGATGAACCCAGTGACCCCACTCTCATTTCTTGATCACACTATAAGGAGGCTTGGACCAAAAAATAATAAAAATCAGCATTGGGAGTTTTACAAGAAATGTGAAGGTCTAATTCTCAGTGGAGTGGCTGATGGGAGATTCGTACGTTATCTACCATCTGTGTTGGCGACTGCAACAATGCTTCACGTTATTGAAGAAGTTGAGCCTTGCAATCCCACCGATTACCAACACCAGCTTCTTGGTGCTCTCAAAATCACCAAGGAAGAAGTAAATGAGTGCTATCAACTCATGGTAGAACTATCATCAAACACATGCTTCAATGCTAGCGAAAAGAAGAACCCTCACAAGCGCAAGTATGAAGAAGTAGAAGAAGAAATGCCAAGCAGCCCAAGTGCTGTAATCGATTCATATTTTAGCTGCAGTGATAATTCAAACGATTCATGGGCAGCAGTTGAGCCGCTCTTCAAGAAGAATAGATCAGTCCAAGAACAACAGAGCAGCAGCAGCATCAGCAGCTTGCTATTACCACCATCACTCAGCCGAGTATTTGTGGATGTTGTTGGCAGCCCTCGTTAA

Network for GWHGAAZE018568

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00134.24	Cyclin_N	93	199	3.70E-24
PF02984.20	Cyclin_C	201	316	1.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14505	CYCD3	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.007
	SRR3591706	second leaf	18.116
	SRR3591707	mature leaf	0.235
	SRR3591708	Shoot apex	58.687
	SRR3591709	Stem	12.605
	SRR3591710	White floral bud	2.119
	SRR3591711	White flower	2.945
	SRR3591712	Green floral bud	2.042
	SRR3591713	Yellow flower	0.137
SRP173429	SRR8316895	Juvenile bud stage	11.368
	SRR8316896	Juvenile bud stage	14.801
	SRR8316897	Juvenile bud stage	5.360
	SRR8316894	Third green stage	2.515
	SRR8316900	Third green stage	2.117
	SRR8316901	Third green stage	3.050
	SRR8316898	Complete white stage	0.552
	SRR8316899	Complete white stage	1.908
	SRR8316903	Complete white stage	1.066
	SRR8316902	Silver flowering stage	1.301
	SRR8316904	Silver flowering stage	0.495
	SRR8316905	Silver flowering stage	0.036
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.056
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.891
	SRR6706287	Light intensity 50%	0.792
	SRR6706288	Light intensity 20%	0.671
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.869
	CNS0095593	Slightly white alabastrum(diploid) 2	4.184
	CNS0095594	Slightly white alabastrum(diploid) 3	5.707
	CNS0095595	Whole white alabastrum(diploid) 2	2.052
	CNS0095596	Whole white alabastrum(diploid) 3	1.092
	CNS0095597	Whole white alabastrum(diploid) 4	0.514
	CNS0095598	Silvery flower (diploied) 1	0.310
	CNS0095599	Silvery flower (diploied) 2	0.153
	CNS0095600	Silvery flower (diploied) 3	0.680
	CNS0095601	Golden flower (diploid) 1	0.503
	CNS0095602	Golden flower (diploid) 2	0.343
	CNS0095603	Golden flower (diploid) 3	0.550
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.279
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.170
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.728
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.563
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.404
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.610
	CNS0095610	Silvery flower (tetraploid) 1	0.549
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.091
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	22.442
	CRR073298	Stem 2	10.823
	CRR073299	Stem 3	33.543
	CRR073300	Leaf 1	1.012
	CRR073301	Leaf 2	1.404
	CRR073302	Leaf 3	1.113
	CRR073303	Juvenile bud 1	0.493
	CRR073304	Juvenile bud 2	0.445
	CRR073305	Juvenile bud 3	1.221
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.098
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.762
	CRR073316	Gold flowering 2	1.360
	CRR073317	Gold flowering 3	0.542
	CRR073318	Tawny withering 1	60.489
	CRR073319	Tawny withering 2	31.275
	CRR073320	Tawny withering 3	82.136