Gene detail

Detail information of GWHGAAZE018556

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AFZ15799.1	0	caffeoyl-CoA O-methyltransferase [Lonicera japonica]
Swissprot	tr\|Q43095\|CAMT_POPTM	4E-168	Caffeoyl-CoA O-methyltransferase
trEMBL	tr\|K9W630\|K9W630_LONJA	0	Caffeoyl-CoA O-methyltransferase {ECO:0000313\|EMBL:AFZ15799.1}
TAIR10	AT4G34050.1	3E-127	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000005	gene	21111079	21113170	+
GWHAAZE00000005	mRNA	21111079	21113170	+
GWHAAZE00000005	exon	21111079	21111171	+
GWHAAZE00000005	exon	21111319	21111398	+
GWHAAZE00000005	exon	21112093	21112237	+
GWHAAZE00000005	exon	21112538	21112669	+
GWHAAZE00000005	exon	21112877	21113170	+
GWHAAZE00000005	CDS	21111079	21111171	+
GWHAAZE00000005	CDS	21111319	21111398	+
GWHAAZE00000005	CDS	21112093	21112237	+
GWHAAZE00000005	CDS	21112538	21112669	+
GWHAAZE00000005	CDS	21112877	21113170	+

Transcript Sequence
>GWHTAAZE018578 ATGGCAACCAACGGAAACTCTAAAGGAGATGATGCCCGAAGGCACCAAGAGGTTGGGCACAAGAGCCTTTTGCAGAGCGATGCTCTTTACCAGTATATACTTGAAACAAGTGTATACCCAAGAGAGCCAGAGCCCATGAAAGAGCTTAGAGAGGTTACTGCCAAACATCCATGGAACATCATGACAACATCAGCTGATGAAGGGCAATTCTTGAACATGCTACTAAAGTTGATTAATGCCAAAAACACCATGGAGATTGGTGTTTACACCGGCTACTCTCTCCTTGCCACAGCCCTAGCTATTCCTGATGATGGAAAGATTTTGGCCATGGACATAAACAAAGAAAACTACGAACTGGGCCTACCCATAATCGAAAAGGCTGGTCTTGCCCACAAGATTGAATTTAGAGAGGGCTCTGCTTTGCCTGTTCTTGATCAAATGATCCAAGATGAAAATTATCATGGGACATTTGATTTCATATTCGTGGATGCGGACAAGGACAATTATCTTAACTACCACAAGAGGCTTATCGACTTGGTTAAAGTTGGGGGATTAATCGGCTACGACAACACCCTATGGAACGGCTCTGTGGTGGCTCCACCGGATGCTCCCATGAGGAAGTATGTCAGGTACTATAGAGACTTCGTGTTGGAGCTCAACAAAGCACTAGCCGTTGATCCCAGAATCGAGATTTGTATGCTCCCTATTGGTGATGGAATTACGCTATGCCGCCGTATCAGTTGA

Network for GWHGAAZE018556

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01596.18	Methyltransf_3	35	246	4.30E-98

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00588	E2.1.1.104	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Phenylpropanoid biosynthesis	map00940
		Stilbenoid, diarylheptanoid and gingerol biosynthesis	map00945
		Flavonoid biosynthesis	map00941

Gene Ontology

GO term	Ontology	Name
GO:0008171	molecular_function	O-methyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.720
	SRR3591706	second leaf	19.365
	SRR3591707	mature leaf	3.952
	SRR3591708	Shoot apex	13.567
	SRR3591709	Stem	477.275
	SRR3591710	White floral bud	14.701
	SRR3591711	White flower	10.136
	SRR3591712	Green floral bud	20.539
	SRR3591713	Yellow flower	3.976
SRP173429	SRR8316895	Juvenile bud stage	121.428
	SRR8316896	Juvenile bud stage	82.456
	SRR8316897	Juvenile bud stage	18.849
	SRR8316894	Third green stage	11.584
	SRR8316900	Third green stage	20.227
	SRR8316901	Third green stage	19.116
	SRR8316898	Complete white stage	2.115
	SRR8316899	Complete white stage	8.930
	SRR8316903	Complete white stage	1.550
	SRR8316902	Silver flowering stage	0.980
	SRR8316904	Silver flowering stage	0.566
	SRR8316905	Silver flowering stage	0.226
	SRR8316906	Gold flowering stage	1.155
	SRR8316907	Gold flowering stage	1.150
	SRR8316908	Gold flowering stage	0.398
SRP132670	SRR6706286	Control	18.138
	SRR6706287	Light intensity 50%	18.559
	SRR6706288	Light intensity 20%	19.562
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.317
	CNS0095593	Slightly white alabastrum(diploid) 2	4.545
	CNS0095594	Slightly white alabastrum(diploid) 3	44.546
	CNS0095595	Whole white alabastrum(diploid) 2	3.772
	CNS0095596	Whole white alabastrum(diploid) 3	6.568
	CNS0095597	Whole white alabastrum(diploid) 4	6.200
	CNS0095598	Silvery flower (diploied) 1	3.152
	CNS0095599	Silvery flower (diploied) 2	1.349
	CNS0095600	Silvery flower (diploied) 3	4.574
	CNS0095601	Golden flower (diploid) 1	0.964
	CNS0095602	Golden flower (diploid) 2	1.395
	CNS0095603	Golden flower (diploid) 3	1.989
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.203
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.163
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.233
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.582
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.377
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.519
	CNS0095610	Silvery flower (tetraploid) 1	1.805
	CNS0095611	Silvery flower (tetraploid) 2	1.782
	CNS0095612	Silvery flower (tetraploid) 3	0.584
	CNS0095613	Golden flower (tetraploid) 1	0.172
	CNS0095614	Golden flower (tetraploid) 2	1.563
	CNS0095615	Golden flower (tetraploid) 3	0.525
CRA001975	CRR073297	Stem 1	87.536
	CRR073298	Stem 2	53.044
	CRR073299	Stem 3	40.250
	CRR073300	Leaf 1	4.939
	CRR073301	Leaf 2	5.566
	CRR073302	Leaf 3	7.916
	CRR073303	Juvenile bud 1	1.800
	CRR073304	Juvenile bud 2	0.751
	CRR073305	Juvenile bud 3	3.551
	CRR073306	Third green 1	0.272
	CRR073307	Third green 2	0.832
	CRR073308	Third green 3	0.217
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.321
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.537
	CRR073316	Gold flowering 2	0.538
	CRR073317	Gold flowering 3	1.167
	CRR073318	Tawny withering 1	36.673
	CRR073319	Tawny withering 2	11.781
	CRR073320	Tawny withering 3	59.977